Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0182100-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:4306924:4309933:1 gene:Os01g0182100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1618 domain containing protein. (Os01t0182100-01)
Sequence

ATGGCAAACCCTAGGCCTCCCTATGTGTTGCTGGAGAGAGTAGTGTTTTTCGGAGGACGC
GAGTTACCCGACGGCACATGGAAAGATGCCGCAGGCATAGTCATCGGATGGAGCAGAGCG
CGGCTGCTGAGTCGGCGAGAGGCGATGGAGGCGATGGAACCCCATCCCTTCCTCGCCGAT
CCTCCGCAAGTGAGCTCCCTGCGGATGATGTCGCCGACGCCCGCGCACGCGCAGCAGCTG
GGATCCATCCGCGACGGCGACATCGCCAGCACCCACAAGGGCATCGTCGTCATCTACGCC
GGCTTCTACCGACCAGGCTGCTCCGATGACCTCGGGGGATGCTACCTCCTCTACGACGCC
CCCACCAACGCCCTCACCGCCATCCCCCCGCTGCCCGACTCGCCTCGCTTCCCCACCTTG
CTACACCTCGGCCGCACCGCCGTCCTCGTCGACGCCTCCCGCTCTGCCGATGATTACATC
CTCGCCGATATCGTCACCAACTCCGGCCTGGGCCTCCCCGAAGCCACCATCTTCGCATGG
TCATCGCTGACCATGAAGAAGAGCGGCGGCGAGTGGGTCAAGTCCTCCATTCCCCGCCTC
CCTCTCCCTGCACATCTATGTGGTCCAAAACACTTGTTCCAGATCGACCTCGCCTTCTCC
CTGGACAGCGGCCGCATCTGCTGGGTTGATCTCCTACAGGGCATCTTGTTCTGCGACCGC
ATCTTGGCACCGGATGGCCCCAAGTTGGGGTTCATTCCGTTGCCCACTGGGTATTGCATC
GATGTCCATCACAGGCTCCGCCATCAGATGATGCCACTAGCCCGGCGTTCCATGGCCTGC
GTCTCTGGCGCCGTCAAGTTTGTCGCCTTGGTTGGCTTGGAAGATATTCATTGCCCCCCC
AATGAGGTGATGCTCAAGACATGGGTTCTGTCCCCTGATTTCAAGGAGTGGAAGGAGGAT
AGCAGGTCCTTATCTGTGGAAGAGATGTGGGCAAGTGAGAGCTTCAAGCAAATGGGGTTG
CCATGTGTTGTACCAGTTTCCCCTGTCCTCAGCCTGACCCAAGATGGGGTAATGTATACC
ATTCTGAATGTCATCGAGCAGGTACCTGCACAAGTTGATGAATTTGGGATCGTCGTTGTC
GATGATGACCTGGTGCCCATTGCCAATTATATGATCCGCTTCGACATTCGGCGAAACAAG
GTCCTGTCCTCCACAAAGATATCTCAACATGGTGAATTGCAGTGGCTTATACCCAATCTC
ATTGCCACTGACTTCACTGCATACCTACAGGACCACCAGAGAGCTGAAGAAGCAGGCAAG
GTAGGAGCAAGCGCCAAGGGGAAGCGCAAGCAGATGGAGTACTACTGA

Peptide Sequence

PEP ID

Os01t0182100-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:4306924:4309933:1 gene:Os01g0182100 transcript:Os01t0182100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1618 domain containing protein. (Os01t0182100-01)
Sequence

MANPRPPYVLLERVVFFGGRELPDGTWKDAAGIVIGWSRARLLSRREAMEAMEPHPFLAD
PPQVSSLRMMSPTPAHAQQLGSIRDGDIASTHKGIVVIYAGFYRPGCSDDLGGCYLLYDA
PTNALTAIPPLPDSPRFPTLLHLGRTAVLVDASRSADDYILADIVTNSGLGLPEATIFAW
SSLTMKKSGGEWVKSSIPRLPLPAHLCGPKHLFQIDLAFSLDSGRICWVDLLQGILFCDR
ILAPDGPKLGFIPLPTGYCIDVHHRLRHQMMPLARRSMACVSGAVKFVALVGLEDIHCPP
NEVMLKTWVLSPDFKEWKEDSRSLSVEEMWASESFKQMGLPCVVPVSPVLSLTQDGVMYT
ILNVIEQVPAQVDEFGIVVVDDDLVPIANYMIRFDIRRNKVLSSTKISQHGELQWLIPNL
IATDFTAYLQDHQRAEEAGKVGASAKGKRKQMEYY

Transcript Sequence

Transcript ID

Os01t0182100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:4306924:4309933:1 gene:Os01g0182100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1618 domain containing protein. (Os01t0182100-01)
Sequence

CATTGCCGCTGGTGGCAATCTTCTTCTTGTTGGACCAAACCCTAGCTAGCAGCAGCAACC
ATGGCAAACCCTAGGCCTCCCTATGTGTTGCTGGAGAGAGTAGTGTTTTTCGGAGGACGC
GAGTTACCCGACGGCACATGGAAAGATGCCGCAGGCATAGTCATCGGATGGAGCAGAGCG
CGGCTGCTGAGTCGGCGAGAGGCGATGGAGGCGATGGAACCCCATCCCTTCCTCGCCGAT
CCTCCGCAAGTGAGCTCCCTGCGGATGATGTCGCCGACGCCCGCGCACGCGCAGCAGCTG
GGATCCATCCGCGACGGCGACATCGCCAGCACCCACAAGGGCATCGTCGTCATCTACGCC
GGCTTCTACCGACCAGGCTGCTCCGATGACCTCGGGGGATGCTACCTCCTCTACGACGCC
CCCACCAACGCCCTCACCGCCATCCCCCCGCTGCCCGACTCGCCTCGCTTCCCCACCTTG
CTACACCTCGGCCGCACCGCCGTCCTCGTCGACGCCTCCCGCTCTGCCGATGATTACATC
CTCGCCGATATCGTCACCAACTCCGGCCTGGGCCTCCCCGAAGCCACCATCTTCGCATGG
TCATCGCTGACCATGAAGAAGAGCGGCGGCGAGTGGGTCAAGTCCTCCATTCCCCGCCTC
CCTCTCCCTGCACATCTATGTGGTCCAAAACACTTGTTCCAGATCGACCTCGCCTTCTCC
CTGGACAGCGGCCGCATCTGCTGGGTTGATCTCCTACAGGGCATCTTGTTCTGCGACCGC
ATCTTGGCACCGGATGGCCCCAAGTTGGGGTTCATTCCGTTGCCCACTGGGTATTGCATC
GATGTCCATCACAGGCTCCGCCATCAGATGATGCCACTAGCCCGGCGTTCCATGGCCTGC
GTCTCTGGCGCCGTCAAGTTTGTCGCCTTGGTTGGCTTGGAAGATATTCATTGCCCCCCC
AATGAGGTGATGCTCAAGACATGGGTTCTGTCCCCTGATTTCAAGGAGTGGAAGGAGGAT
AGCAGGTCCTTATCTGTGGAAGAGATGTGGGCAAGTGAGAGCTTCAAGCAAATGGGGTTG
CCATGTGTTGTACCAGTTTCCCCTGTCCTCAGCCTGACCCAAGATGGGGTAATGTATACC
ATTCTGAATGTCATCGAGCAGGTACCTGCACAAGTTGATGAATTTGGGATCGTCGTTGTC
GATGATGACCTGGTGCCCATTGCCAATTATATGATCCGCTTCGACATTCGGCGAAACAAG
GTCCTGTCCTCCACAAAGATATCTCAACATGGTGAATTGCAGTGGCTTATACCCAATCTC
ATTGCCACTGACTTCACTGCATACCTACAGGACCACCAGAGAGCTGAAGAAGCAGGCAAG
GTAGGAGCAAGCGCCAAGGGGAAGCGCAAGCAGATGGAGTACTACTGAATGATATGTAGT
ATATTTCTGCTATTTATCATGCACATAACATATCGCTTTTTTTAGCTTACATCCTGTGAC
TGTGAGATGTAAGGTCAAATGTGTTTAGGTTAACCATCAGAGCTTATTTTGTCACTACCA
GACCTTATTTTAATGACTAAGCCTAGCAGTTAAACTGAATGGTAACCAGTATGTATGTGT
AATCATCGTGGATTTATGTCATACTACTAATAGTGTTGGGCTCTTCAAATCCAACATTGT
ACC