Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0180600-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:4234573:4244531:-1 gene:Os01g0180600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to MutS homolog 7 (Fragment). (Os01t0180600-01)
Sequence	ATGCAGCCGCGGCGGCGGCAGCAGCAGCAGCAGTCGATCCTCTCCTTCCTCCAGAAGAAG CCGGCGGCGGCGGCGGGGGAGGAGGGCGCGACGCCCGAGAGGCCCCCGCGGCCTCCCGCC GCGTCGGTCGCGGGGATCATGGAGAGGCTCGTGCGGCCGCCGCGGCAGCAGCAGCAGGGG AGAGACCAGGATGCTTCCCAGGCTAGACATGTGGAGCAGAGAGCCTTACCTGTGAAAAAT CAAACTACTTCAAATGAGTGCTCAAGTGCATTGTTCTTAGAATCTTGCAATGCTGGAGAT AACAAAGCAGCCATGTTGATTGCAGAAGAAGGTTCGAATATGACTCCTTTGCAGGAGCCC CTGAAGTCCTTATGGCCTTCCAAAGATGACTTTGTTAGAGCAAGCACACTGTCCCCGGAA CTTGGTTTATATCAAAATCTTCCACCGCATTGTCCAAAGAAGTTACCCTTTGAGTCTTCC AATAATAACTGCATTGGAGCTAATTCATCATTTGAAGAGTTTGACGTACAAACTCCTCAG GATACTTCAAAAACAGTCTTCTGGAGATCTTCTCGTGGAGCTGATACACCTTTAACAGAA TCTGATTCAGATCAAACTCCTTTGCAGCATCCATCAAAGTTCTCATTTGTATCTCCTAAT GGTGAATATGTCCGGGGCGCTACACTGTTTGCACTTGATTCCAATTATACTCCTAGACGA GAATCCTCAGAGAAGCTTAGTTCTGGGCCTTCAGACCTTCCATACATTAAAGCAACAAAA TTATTTACAGAATTTGATTCAAATGGAACACCATCACAGAACCATCTGAAAAAGTTATCC TCAGTGCCTAAGAATGACAAACGCATTGGAGCAGGTGCTGAACTATTTTCGGAATTTGAT CCGAGTCCCCTGAAACCAGAAACACCAGTGATGCGAGCAGTAATTCCTCGTCTGAAGCGG GTTCAAGAAGATCAACGTGTGACTACCAACGACTCATGCTCTCCTTTCTGGGGTCCAAAC AAGAAGGTGAAACCAGCTCAGTGTTCTCCAGTTGAGAATAAGGTCCATGATGAAATGGCT GAAAGTGCACGCAGCAAGTTTGAGTGGCTGAATCCTTCGAATATCAGAGATGCAAATAGA AGGCGGCTGGCAGACCCACTTTATGATAAGACAACTCTTTTTATTCCACCTGATGCATTG AGAAAGATGTCTACATCTCAAAAGCAATATTGGAATATTAAGTGCAAGTATATGGATGTT GTTTTGTTTTTCAAAGTGGGAAAATTCTATGAGCTCTATGAGGTGGATGCTGAGATTGGC CAAAAGGAACTTGACTGGAAAATGACTATCAGTGGGGTGGGAAAGTGCCGGCAGGTTGGC ATTTCAGAAAGTGGGATAGATGTTGCCGTTGAAAAGCTTTTAGCTCGAGGGTATAAAGTT GGCAGAATTGAACAAATGGAATCTGCAGACCAAGCCAAATCTAGAGGATCAAATTCGGTT ATTCTAAGAAAATTGGTTCATGTATCCACACCATCAACAGTAGGGGACAGCAACATTGGG GCTGATGCTGTTCACCTTCTTTCACTCAAAGAGATTACACTAGCTTCAAATGGTTCCCGG GTCTATGGATTTGCATTTTTAGATTATGCTGCACTTAAAATTTGGGTGGGTTCAGTCCAT GATGATGATACATTTGCAGCTTTGGGGGCTCTGCTGGTGCAGGTCTCTCCGAAAGAAATA ATCTATGAAACCTCAGGCCTTTCAAAAGAAACTCATAGATTAATTAAGAAATATGCTTCA GCAGGTTCTGTGAAAATGCAGCTGACCCCACTATATGGGTTATATTTCTCTGACGTTTCA GAAATTCAAACGTTAATAGATTCTAGAGGATACTTTAAAGCGTCAACAAGTTCATGGTTA TCTGCATTGAATTCTTCAGTGAATAAAGATGCAGTTATTTGTGCACTCGGTGGACTTGTG AGCCATTTAACTAGACTTATGCTAGAGGATGCTCTGAAAAACGGGGAGGTCTTAGCCTAC CATGTATACAGAACATGTCTAAGAATGGATGGTCAGACTCTTGTGAACCTTGAGATTTTC AGCAACAACTTTGATGGTGGTTCATCAGGTACCTTATATAAGCACCTCAATCACTGCATA ACTCCATGCGGTAAGCGGCTTCTAAGAAGATGGATTTGCCACCCACTAAAAGATATTGAT GCTATCAATGAAAGGCTCGACATTGTTGAGGGCTTCATTCAAAATTGTGGGCTAGGATCT GTTACACTAGAGCATCTACGTAAAGTCCCTGATCTCGAGAGGTTACTAGGACGAGTAAAA TCCACTGTTGGTTTATCATCTGCGGTTCTGTTGCCCTTTGTTGGAGAAAAGATATTAAAA AGAAGGATAAAAACGTTTGGCATGCTTGTCAAGGGCCTCCGTGTTGGAATTGACTTACTA GACATCCTACAAAGACAAGATCATGGCATCTCAGCATTGTCAAAGGCTGTGGATATTCCA ACATTGAGCTCCCTTGGTGAATTAATTCATCATTTTGAAGAGGCAATAGATGATGATTTT CCAAGATACCAGGATCATAGTGTCAAAGACGATGATGCAAACACTTTGGCTATGCTAGTG GATCTTTTAGTTGGAAAAGCTTCTGAATGGTCTCTAGTGATCAATGCTCTGAGCACTATC GATGTGCTTAGGTCCTTTGCAGCCATGGCATTGTCGTCATTTGGCACAACGTGCAGACCG AACATTCTGCTGAAAGGAAAAGCGCCTGTACTTCAGATGAAGGGTTTATGGCATCCTTAT GCTTTTGCAGAAAGTGTAAATGGGTTGGTACCAAATGATCTATCTCTTGGTCAGAATTTA TCTGGCCAAAATCGCTTTGCATTGTTGTTGACTGGTCCAAATATGGGCGGGAAATCTACA ATAATGCGTGCCACCTGCCTAGCTATTGTGCTTGCCCAGCTCGGCTGTTATGTTCCCTGT CAGTCATGCGAGTTGACACTTGCAGATGCCATATTTACACGGATTGGTGCAATGGATCGG ATTATGTCTGGAGAAAGTACCTTTCTTGTCGAATGCACTGAGACTGCATCTATTCTTGAG AATGCAACCGAGGATTCTCTCGTCTTGCTTGATGAGCTTGGCAGAGGAACTAGCACATTT GATGGATATGCAATTGCATATGCAGTATTCCGACACCTTGTCGAAGCGGTCCGATGCCGT CTGCTCTTCGCAACTCACTACCATCCTCTCACCAAGGAGTTCGCCTCTCACCCCCACGTC ACCCTTCAGCACATGGCCTGCATGCTGAAGCCAAGAAACGGCGGCGACGGCGGCGAGAAG GAGCTCACCTTCCTCTACCGGCTCACCTCGGGCGCCTGCCCGGAGAGCTACGGCCTGCAG GTCGCCACCATGGCAGGGCTCCCGAGGTCGATCGTGGAGAGGGCGTCGGCCGCCGGCGAG ATGATGAGGTCGAAGATCGCCGGGAACTTCAGGTCGAGCGAGGAGCGTGCGGAGTTCTCG ACCCTCCATGAGGAGTGGGTGAGGACGATCGTGGCGATCGGCGGCGTGAAGGACGCGCAC CTGGACGAGGACACCATGGACACGCTGTTCTGCGTCTTCCATGAGCTGAAGGCTCACTTC AGGAAACGGAGGTGA

Peptide Sequence

PEP ID	Os01t0180600-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:4234573:4244531:-1 gene:Os01g0180600 transcript:Os01t0180600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to MutS homolog 7 (Fragment). (Os01t0180600-01)
Sequence	MQPRRRQQQQQSILSFLQKKPAAAAGEEGATPERPPRPPAASVAGIMERLVRPPRQQQQG RDQDASQARHVEQRALPVKNQTTSNECSSALFLESCNAGDNKAAMLIAEEGSNMTPLQEP LKSLWPSKDDFVRASTLSPELGLYQNLPPHCPKKLPFESSNNNCIGANSSFEEFDVQTPQ DTSKTVFWRSSRGADTPLTESDSDQTPLQHPSKFSFVSPNGEYVRGATLFALDSNYTPRR ESSEKLSSGPSDLPYIKATKLFTEFDSNGTPSQNHLKKLSSVPKNDKRIGAGAELFSEFD PSPLKPETPVMRAVIPRLKRVQEDQRVTTNDSCSPFWGPNKKVKPAQCSPVENKVHDEMA ESARSKFEWLNPSNIRDANRRRLADPLYDKTTLFIPPDALRKMSTSQKQYWNIKCKYMDV VLFFKVGKFYELYEVDAEIGQKELDWKMTISGVGKCRQVGISESGIDVAVEKLLARGYKV GRIEQMESADQAKSRGSNSVILRKLVHVSTPSTVGDSNIGADAVHLLSLKEITLASNGSR VYGFAFLDYAALKIWVGSVHDDDTFAALGALLVQVSPKEIIYETSGLSKETHRLIKKYAS AGSVKMQLTPLYGLYFSDVSEIQTLIDSRGYFKASTSSWLSALNSSVNKDAVICALGGLV SHLTRLMLEDALKNGEVLAYHVYRTCLRMDGQTLVNLEIFSNNFDGGSSGTLYKHLNHCI TPCGKRLLRRWICHPLKDIDAINERLDIVEGFIQNCGLGSVTLEHLRKVPDLERLLGRVK STVGLSSAVLLPFVGEKILKRRIKTFGMLVKGLRVGIDLLDILQRQDHGISALSKAVDIP TLSSLGELIHHFEEAIDDDFPRYQDHSVKDDDANTLAMLVDLLVGKASEWSLVINALSTI DVLRSFAAMALSSFGTTCRPNILLKGKAPVLQMKGLWHPYAFAESVNGLVPNDLSLGQNL SGQNRFALLLTGPNMGGKSTIMRATCLAIVLAQLGCYVPCQSCELTLADAIFTRIGAMDR IMSGESTFLVECTETASILENATEDSLVLLDELGRGTSTFDGYAIAYAVFRHLVEAVRCR LLFATHYHPLTKEFASHPHVTLQHMACMLKPRNGGDGGEKELTFLYRLTSGACPESYGLQ VATMAGLPRSIVERASAAGEMMRSKIAGNFRSSEERAEFSTLHEEWVRTIVAIGGVKDAH LDEDTMDTLFCVFHELKAHFRKRR

Transcript Sequence

Transcript ID	Os01t0180600-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:4234573:4244531:-1 gene:Os01g0180600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to MutS homolog 7 (Fragment). (Os01t0180600-01)
Sequence	CTCGCAAATTCCCCCCCGAAAAATCCCATTTCCTCCCCCCGCCTCGTCGCCTCCACTCCA TTCCCCTCTCTCTCCCATTCTCAAACTCGCACCCTCCGCCTTCCCCCCGCCCGACCCTCG CCGGCGACGATGCAGCCGCGGCGGCGGCAGCAGCAGCAGCAGTCGATCCTCTCCTTCCTC CAGAAGAAGCCGGCGGCGGCGGCGGGGGAGGAGGGCGCGACGCCCGAGAGGCCCCCGCGG CCTCCCGCCGCGTCGGTCGCGGGGATCATGGAGAGGCTCGTGCGGCCGCCGCGGCAGCAG CAGCAGGGGAGAGACCAGGATGCTTCCCAGGCTAGACATGTGGAGCAGAGAGCCTTACCT GTGAAAAATCAAACTACTTCAAATGAGTGCTCAAGTGCATTGTTCTTAGAATCTTGCAAT GCTGGAGATAACAAAGCAGCCATGTTGATTGCAGAAGAAGGTTCGAATATGACTCCTTTG CAGGAGCCCCTGAAGTCCTTATGGCCTTCCAAAGATGACTTTGTTAGAGCAAGCACACTG TCCCCGGAACTTGGTTTATATCAAAATCTTCCACCGCATTGTCCAAAGAAGTTACCCTTT GAGTCTTCCAATAATAACTGCATTGGAGCTAATTCATCATTTGAAGAGTTTGACGTACAA ACTCCTCAGGATACTTCAAAAACAGTCTTCTGGAGATCTTCTCGTGGAGCTGATACACCT TTAACAGAATCTGATTCAGATCAAACTCCTTTGCAGCATCCATCAAAGTTCTCATTTGTA TCTCCTAATGGTGAATATGTCCGGGGCGCTACACTGTTTGCACTTGATTCCAATTATACT CCTAGACGAGAATCCTCAGAGAAGCTTAGTTCTGGGCCTTCAGACCTTCCATACATTAAA GCAACAAAATTATTTACAGAATTTGATTCAAATGGAACACCATCACAGAACCATCTGAAA AAGTTATCCTCAGTGCCTAAGAATGACAAACGCATTGGAGCAGGTGCTGAACTATTTTCG GAATTTGATCCGAGTCCCCTGAAACCAGAAACACCAGTGATGCGAGCAGTAATTCCTCGT CTGAAGCGGGTTCAAGAAGATCAACGTGTGACTACCAACGACTCATGCTCTCCTTTCTGG GGTCCAAACAAGAAGGTGAAACCAGCTCAGTGTTCTCCAGTTGAGAATAAGGTCCATGAT GAAATGGCTGAAAGTGCACGCAGCAAGTTTGAGTGGCTGAATCCTTCGAATATCAGAGAT GCAAATAGAAGGCGGCTGGCAGACCCACTTTATGATAAGACAACTCTTTTTATTCCACCT GATGCATTGAGAAAGATGTCTACATCTCAAAAGCAATATTGGAATATTAAGTGCAAGTAT ATGGATGTTGTTTTGTTTTTCAAAGTGGGAAAATTCTATGAGCTCTATGAGGTGGATGCT GAGATTGGCCAAAAGGAACTTGACTGGAAAATGACTATCAGTGGGGTGGGAAAGTGCCGG CAGGTTGGCATTTCAGAAAGTGGGATAGATGTTGCCGTTGAAAAGCTTTTAGCTCGAGGG TATAAAGTTGGCAGAATTGAACAAATGGAATCTGCAGACCAAGCCAAATCTAGAGGATCA AATTCGGTTATTCTAAGAAAATTGGTTCATGTATCCACACCATCAACAGTAGGGGACAGC AACATTGGGGCTGATGCTGTTCACCTTCTTTCACTCAAAGAGATTACACTAGCTTCAAAT GGTTCCCGGGTCTATGGATTTGCATTTTTAGATTATGCTGCACTTAAAATTTGGGTGGGT TCAGTCCATGATGATGATACATTTGCAGCTTTGGGGGCTCTGCTGGTGCAGGTCTCTCCG AAAGAAATAATCTATGAAACCTCAGGCCTTTCAAAAGAAACTCATAGATTAATTAAGAAA TATGCTTCAGCAGGTTCTGTGAAAATGCAGCTGACCCCACTATATGGGTTATATTTCTCT GACGTTTCAGAAATTCAAACGTTAATAGATTCTAGAGGATACTTTAAAGCGTCAACAAGT TCATGGTTATCTGCATTGAATTCTTCAGTGAATAAAGATGCAGTTATTTGTGCACTCGGT GGACTTGTGAGCCATTTAACTAGACTTATGCTAGAGGATGCTCTGAAAAACGGGGAGGTC TTAGCCTACCATGTATACAGAACATGTCTAAGAATGGATGGTCAGACTCTTGTGAACCTT GAGATTTTCAGCAACAACTTTGATGGTGGTTCATCAGGTACCTTATATAAGCACCTCAAT CACTGCATAACTCCATGCGGTAAGCGGCTTCTAAGAAGATGGATTTGCCACCCACTAAAA GATATTGATGCTATCAATGAAAGGCTCGACATTGTTGAGGGCTTCATTCAAAATTGTGGG CTAGGATCTGTTACACTAGAGCATCTACGTAAAGTCCCTGATCTCGAGAGGTTACTAGGA CGAGTAAAATCCACTGTTGGTTTATCATCTGCGGTTCTGTTGCCCTTTGTTGGAGAAAAG ATATTAAAAAGAAGGATAAAAACGTTTGGCATGCTTGTCAAGGGCCTCCGTGTTGGAATT GACTTACTAGACATCCTACAAAGACAAGATCATGGCATCTCAGCATTGTCAAAGGCTGTG GATATTCCAACATTGAGCTCCCTTGGTGAATTAATTCATCATTTTGAAGAGGCAATAGAT GATGATTTTCCAAGATACCAGGATCATAGTGTCAAAGACGATGATGCAAACACTTTGGCT ATGCTAGTGGATCTTTTAGTTGGAAAAGCTTCTGAATGGTCTCTAGTGATCAATGCTCTG AGCACTATCGATGTGCTTAGGTCCTTTGCAGCCATGGCATTGTCGTCATTTGGCACAACG TGCAGACCGAACATTCTGCTGAAAGGAAAAGCGCCTGTACTTCAGATGAAGGGTTTATGG CATCCTTATGCTTTTGCAGAAAGTGTAAATGGGTTGGTACCAAATGATCTATCTCTTGGT CAGAATTTATCTGGCCAAAATCGCTTTGCATTGTTGTTGACTGGTCCAAATATGGGCGGG AAATCTACAATAATGCGTGCCACCTGCCTAGCTATTGTGCTTGCCCAGCTCGGCTGTTAT GTTCCCTGTCAGTCATGCGAGTTGACACTTGCAGATGCCATATTTACACGGATTGGTGCA ATGGATCGGATTATGTCTGGAGAAAGTACCTTTCTTGTCGAATGCACTGAGACTGCATCT ATTCTTGAGAATGCAACCGAGGATTCTCTCGTCTTGCTTGATGAGCTTGGCAGAGGAACT AGCACATTTGATGGATATGCAATTGCATATGCAGTATTCCGACACCTTGTCGAAGCGGTC CGATGCCGTCTGCTCTTCGCAACTCACTACCATCCTCTCACCAAGGAGTTCGCCTCTCAC CCCCACGTCACCCTTCAGCACATGGCCTGCATGCTGAAGCCAAGAAACGGCGGCGACGGC GGCGAGAAGGAGCTCACCTTCCTCTACCGGCTCACCTCGGGCGCCTGCCCGGAGAGCTAC GGCCTGCAGGTCGCCACCATGGCAGGGCTCCCGAGGTCGATCGTGGAGAGGGCGTCGGCC GCCGGCGAGATGATGAGGTCGAAGATCGCCGGGAACTTCAGGTCGAGCGAGGAGCGTGCG GAGTTCTCGACCCTCCATGAGGAGTGGGTGAGGACGATCGTGGCGATCGGCGGCGTGAAG GACGCGCACCTGGACGAGGACACCATGGACACGCTGTTCTGCGTCTTCCATGAGCTGAAG GCTCACTTCAGGAAACGGAGGTGAGCGTTGAGCGGTCAGCACTAACCATCACTAATTATC AATGTTTATATCCATGTAAGTGCCATCTTTTGCGTGTCCGGTGTTATCTTTTATTATGGG TAATCAGGGGTTTTTAATTGATGGCTCTAGTTCTGTATATATACAGTATGTCGTATACTC AATCAGAGCTATAGTAATCTGGCCTGTTTGACTGAAGCTC