Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0178400-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:4068636:4070331:-1 gene:Os01g0178400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Protein phosphatase 2A B'kappa subunit. (Os01t0178400-01)
Sequence

CCGCAGCTGACGTACTGCATCACACAGTTCATCGAGAAGGAAACCAAGCTTGCAGGGACT
GTAATCAGAGGCCTGCTGAAGTACTGGCCAGTTACAAACAGTCAGAAGGAGATGATGTTC
TTGGGGGAGTTGGAGGAGGTGCTCGAGTTGACCGACATGGCTGAGTTTCAGAAATGCATG
GTACCGCTGTTCCGCAGGATTGCAAGTTGCCTGAATAGCTCTCACTTTCAAGTTGCTGAG
AGAGCCTTATTCTTGTGGAACAACGAGCACTTGTTCGATATGATCTCCCAAAATCGTCAG
GTGATCCTACCGATCATATATCCAGCTCTGGAGAGGAACACCCGTTGGCACTGGAATCAG
TCGGTCCTCAATGTTACCCTGAATGTCAAGAAAATGTTCTTGGACATGGACGAGAGATTG
CTCCTGGCCTGCCAGAACAACTTCCAAGCGGAAGAAGAGAAGCGAGCCGCGACCGAGGAG
CGGCGAAGGCTGATGTGGGAGCAGCTGGAGCGGAATGCCGCTGCGGCATGCCATCCACAT
CCAGTGATCACCACTACTGACTCAAGCTTTCCTTCACCCCCTTCATCAACTCCTCTGGTA
GCTCCCACTGTGACATGA

Peptide Sequence

PEP ID

Os01t0178400-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:4068636:4070331:-1 gene:Os01g0178400 transcript:Os01t0178400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Protein phosphatase 2A B'kappa subunit. (Os01t0178400-01)
Sequence

PQLTYCITQFIEKETKLAGTVIRGLLKYWPVTNSQKEMMFLGELEEVLELTDMAEFQKCM
VPLFRRIASCLNSSHFQVAERALFLWNNEHLFDMISQNRQVILPIIYPALERNTRWHWNQ
SVLNVTLNVKKMFLDMDERLLLACQNNFQAEEEKRAATEERRRLMWEQLERNAAAACHPH
PVITTTDSSFPSPPSSTPLVAPTVT

Transcript Sequence

Transcript ID

Os01t0178400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:4068636:4070331:-1 gene:Os01g0178400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Protein phosphatase 2A B'kappa subunit. (Os01t0178400-01)
Sequence

CCGCAGCTGACGTACTGCATCACACAGTTCATCGAGAAGGAAACCAAGCTTGCAGGGACT
GTAATCAGAGGCCTGCTGAAGTACTGGCCAGTTACAAACAGTCAGAAGGAGATGATGTTC
TTGGGGGAGTTGGAGGAGGTGCTCGAGTTGACCGACATGGCTGAGTTTCAGAAATGCATG
GTACCGCTGTTCCGCAGGATTGCAAGTTGCCTGAATAGCTCTCACTTTCAAGTTGCTGAG
AGAGCCTTATTCTTGTGGAACAACGAGCACTTGTTCGATATGATCTCCCAAAATCGTCAG
GTGATCCTACCGATCATATATCCAGCTCTGGAGAGGAACACCCGTTGGCACTGGAATCAG
TCGGTCCTCAATGTTACCCTGAATGTCAAGAAAATGTTCTTGGACATGGACGAGAGATTG
CTCCTGGCCTGCCAGAACAACTTCCAAGCGGAAGAAGAGAAGCGAGCCGCGACCGAGGAG
CGGCGAAGGCTGATGTGGGAGCAGCTGGAGCGGAATGCCGCTGCGGCATGCCATCCACAT
CCAGTGATCACCACTACTGACTCAAGCTTTCCTTCACCCCCTTCATCAACTCCTCTGGTA
GCTCCCACTGTGACATGACATGTGGATCAAATATACTCCATTTCCACTTATTTGTTAGCT
AGCTAGATGATGATGAAGTTGCTTGCTTCTCCTGGGACTATACAGAAGGCATTTTGTTAC
CTTCGTAAGGCCCCCCCATGTCAAAGTCTGTAATTAATAGTTGATGGTTTGAGGACAAAA
TGACACTTGATTTTTTCTTCTTTTTTTGTGGTGTATTCTCGAGTAATGGGCATTGCTTTC
TAGGC