Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0176500-02
CDS Infomation

cds chromosome:IRGSP-1.0:1:3939133:3940854:-1 gene:Os01g0176500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os01t0176500-01);Hypothetical conserved gene. (Os01t0176500-02)
Sequence

AAGATGATCAGAGACGCCATGCACCAGTCTGTTGTGTACAAGGAGCAGCTTAGGATGAAC
CAAGCTGCAACGAGCACTCTCATGGCGAGACTCGAGGCCCAGAGAGCAATGTGTGACTCA
TCCGAAACCGAGCTCCGGAGGAAGTACCAGCAGAAGGATGAACTGGAGAAGCAGATCAAG
CCTTTCACCGATCAAGCAAGGAAGCGGTATCGTGTTGACGATGATGGATTGCTAGAGGAA
AGGCACAGCTTAGAAGAAAGGCACAGTGAAAGGGTGAAGTATTTTCCAGGAATAAGACTG
AGGAGCAGAAACCCTCTCAAGCAGGAGCTGAGGGTTTTCCTGGAGGAGGACCAGAGGGCT
TCAGATGCATACATCTCCCTAGAGGAAGAGGAAATTGCAGGTGAAACTTCAACAATGGGA
AATTTCAGGAATTCACCTTTCAAGGTGATAAACTTCCCAAGGAGGTCCATGGAAGACAAC
ACAGTTGACACTGAGAGAGGAAGAGCATCAGTGAGGGAGAAGCTGGAGCATCTGGCGATC
AAAGAACGGCAGCGCGGCAGAAGGAGAGAAAGGACCATGTCATCAAGGGGATCAAGGGCA
ACTAGCACTCCTGTGAGGTCAAGAGATGGCAATGGCAAGGGCAAAGCAGCCATGGTGCAA
TGTGAGTCTGAGACTGAAAGATCTCAGACAGTTTCAGTGCCAAGGACATCCTCAGTTCCT
CCAAGTCCTCCTTACAGAGTAACTGGCATGTATGGAACACCTAGATATCCTGCAGAGAAA
TCGGTGCTATTGAAAAAGAATAATGTGATTCATCGGCAAGGCGTCGGTCGATCCGAAGGC
GACGCAAACATGAACCACACCGGCAAAGGAACTGTGGATAAGTGGCTTCAAATGCTCATG
GAGGATCAGCAGCAGCAAGAAGATCCTGCAGCAGCATATCATTCTTCTGAAGATCACAAC
ACTGCTGATGAAATCGCTTCAGACGAGCACCAAATGCAAAGCAGAATTGATGATGAGAGC
TGCAGGAATGAGATCACCGAATGCTCCGATGAGATCGTCGAGGTCGGTGGCGATGGTGCT
ACTGAGCAGCAGGACAGGTGCAGGAACAGCTTTGAGATCAAGGAGAGGGGAGAGGAGAAG
AAGATCTGGTTCCCAAGGTCTGACAGCTCCAGGGGTTTCAGGTCTCTGCCTTCCTCACCT
TCCAAGATCCTTGGAATGAGAAGGGGTGTGGAGTGCATGAGCAGGAAGCCCAAGGTGGTC
GGCGACGACAATGGCAGATACGGCTATGAAGATTCAGTGTCCACAAGCAGCAGCAAGTTC
CTCACCAGGTGCAAGCAAGCCATCAAGAAAGCAGTGAACAAATAA

Peptide Sequence

PEP ID

Os01t0176500-02
PEP Infomation

pep chromosome:IRGSP-1.0:1:3939133:3940854:-1 gene:Os01g0176500 transcript:Os01t0176500-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os01t0176500-01);Hypothetical conserved gene. (Os01t0176500-02)
Sequence

KMIRDAMHQSVVYKEQLRMNQAATSTLMARLEAQRAMCDSSETELRRKYQQKDELEKQIK
PFTDQARKRYRVDDDGLLEERHSLEERHSERVKYFPGIRLRSRNPLKQELRVFLEEDQRA
SDAYISLEEEEIAGETSTMGNFRNSPFKVINFPRRSMEDNTVDTERGRASVREKLEHLAI
KERQRGRRRERTMSSRGSRATSTPVRSRDGNGKGKAAMVQCESETERSQTVSVPRTSSVP
PSPPYRVTGMYGTPRYPAEKSVLLKKNNVIHRQGVGRSEGDANMNHTGKGTVDKWLQMLM
EDQQQQEDPAAAYHSSEDHNTADEIASDEHQMQSRIDDESCRNEITECSDEIVEVGGDGA
TEQQDRCRNSFEIKERGEEKKIWFPRSDSSRGFRSLPSSPSKILGMRRGVECMSRKPKVV
GDDNGRYGYEDSVSTSSSKFLTRCKQAIKKAVNK

Transcript Sequence

Transcript ID

Os01t0176500-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:3939133:3940854:-1 gene:Os01g0176500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os01t0176500-01);Hypothetical conserved gene. (Os01t0176500-02)
Sequence

GAAGATGATCAGAGACGCCATGCACCAGTCTGTTGTGTACAAGGAGCAGCTTAGGATGAA
CCAAGCTGCAACGAGCACTCTCATGGCGAGACTCGAGGCCCAGAGAGCAATGTGTGACTC
ATCCGAAACCGAGCTCCGGAGGAAGTACCAGCAGAAGGATGAACTGGAGAAGCAGATCAA
GCCTTTCACCGATCAAGCAAGGAAGCGGTATCGTGTTGACGATGATGGATTGCTAGAGGA
AAGGCACAGCTTAGAAGAAAGGCACAGTGAAAGGGTGAAGTATTTTCCAGGAATAAGACT
GAGGAGCAGAAACCCTCTCAAGCAGGAGCTGAGGGTTTTCCTGGAGGAGGACCAGAGGGC
TTCAGATGCATACATCTCCCTAGAGGAAGAGGAAATTGCAGGTGAAACTTCAACAATGGG
AAATTTCAGGAATTCACCTTTCAAGGTGATAAACTTCCCAAGGAGGTCCATGGAAGACAA
CACAGTTGACACTGAGAGAGGAAGAGCATCAGTGAGGGAGAAGCTGGAGCATCTGGCGAT
CAAAGAACGGCAGCGCGGCAGAAGGAGAGAAAGGACCATGTCATCAAGGGGATCAAGGGC
AACTAGCACTCCTGTGAGGTCAAGAGATGGCAATGGCAAGGGCAAAGCAGCCATGGTGCA
ATGTGAGTCTGAGACTGAAAGATCTCAGACAGTTTCAGTGCCAAGGACATCCTCAGTTCC
TCCAAGTCCTCCTTACAGAGTAACTGGCATGTATGGAACACCTAGATATCCTGCAGAGAA
ATCGGTGCTATTGAAAAAGAATAATGTGATTCATCGGCAAGGCGTCGGTCGATCCGAAGG
CGACGCAAACATGAACCACACCGGCAAAGGAACTGTGGATAAGTGGCTTCAAATGCTCAT
GGAGGATCAGCAGCAGCAAGAAGATCCTGCAGCAGCATATCATTCTTCTGAAGATCACAA
CACTGCTGATGAAATCGCTTCAGACGAGCACCAAATGCAAAGCAGAATTGATGATGAGAG
CTGCAGGAATGAGATCACCGAATGCTCCGATGAGATCGTCGAGGTCGGTGGCGATGGTGC
TACTGAGCAGCAGGACAGGTGCAGGAACAGCTTTGAGATCAAGGAGAGGGGAGAGGAGAA
GAAGATCTGGTTCCCAAGGTCTGACAGCTCCAGGGGTTTCAGGTCTCTGCCTTCCTCACC
TTCCAAGATCCTTGGAATGAGAAGGGGTGTGGAGTGCATGAGCAGGAAGCCCAAGGTGGT
CGGCGACGACAATGGCAGATACGGCTATGAAGATTCAGTGTCCACAAGCAGCAGCAAGTT
CCTCACCAGGTGCAAGCAAGCCATCAAGAAAGCAGTGAACAAATAAACAATTCTTTGCAC
CATGATGCAGCACATTTCAACCTGTTTATTCTTCAAATCTGTGTGTTTAAATTCGTGTCA
AATTGCTAGTTTTGTTTTCTGTAGCTGAATAAGTTAGTACTCAAGTGAGGCATACATAGC
TTTGCAGAGTTCCTTCTGCAACTAGTGAGACAGACATTTACTGTTCATGGTCACTATTAT
GTGATCATACTGGCGTTGTACAACTATTTGTTGATTTATTTATGAAGAGAAACTAAATTC
TT