Gene sequences

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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0176300-00
CDS Infomation	cds chromosome:IRGSP-1.0:1:3926661:3929467:-1 gene:Os01g0176300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0176300-00)
Sequence	ATGGTCCGCGCCCTGTCACGTGCCCGCAGCCTGCTCGACGGAATTCCCCACCGGCGGGGG CGTGCTGCGAGTTCGTCCGTGTCCGGCCATGGCGCGGAGGAGGCTGTTGCGGGATACGTC CGCATGCTGGCTGGCGGGGCCAGGCCCGACGCGTACACGTTCCCGTCCTTGCTCAAGGCG GCGGCGGCGGCGCGGGGCGCGGCCGTGGCGGCGGCATCAGTTGGCGGTGCCATCCACGCG CACGTGGTTAAGTTCGGGATGGAGTCGAACGCTCACGCGGCGAGCTCCCTGATCGTCATG TACGCGGCCAGGGGAGACGGCGCCGCGGCGCGCGCGGTGCTGGAGGCGGCGTGCCTCGCC ACGGGAGGGGGAGCGCCGGTCATGTGGAACGCGCTCATCTCTGGCCATAACAGGAGCGGG CGGTTCGAGCTGTCCTGCTGCTCCTTCGTGGACATGGTCAGAGCCAGCGCCATGGCCACC GCGGTCACCTACGTCTCGGTGCTCTCGGCTTGCGGGAAAGGGAAGGACCTGCTGCTGGGG ATGCAGGTGCACAAGCGCGTCCTCGAGAGCGGGGTGTTGCCTGATCAGAGGGTGGAGAAC GCTCTGGTTGATATGTACGCCGAGTGCGGCGACATGGACGCGGCCTGGGTGTTGTTCGAG GGCATGCAGATGAGGAGCATGGCGTCCTGGACGTCGGTAATTTCTGGCCTTGTGAGGTCA GGCCAGGTTGATCGTGCCAGGGACCTGTTTGATCATATGCCTGAAAGAGACACCATCGCA TGGACCGCGATGATCGATGGCTATGTACAGGTTGGCAGGTTCAGGGACGCATTGGAGACA TTCCGTTACATGCAGATTTGCAAGGTGAGAGCAGATGAGTTCACCATGGTCAGTGTGGTC ACTGCCTGTGCCCAGCTAGGTGCTCTGGAGACAGGGGAATGGGCAAGGATTTACATGGGA AGACTTGGGATCAAGATGGATGTTTTTGTCGGGAATGCACTCATAGACATGTACTCAAAG TGTGGGAGCATTGAGCGCGCATTGGATGTATTCAAAGATATGCACAACAGAGATAAGTTT ACCTGGACTGCCATTATACTTGGTCTCGCAGTGAATGGCCGTGGGGAGGAGGCTATTGAC ATGTTCTATAGAATGCTCAGGGCTTTACAAACTCCAGATGAGGTGACCTTCGTTGGTGTT CTCACTGCCTGCACTCATGCTGGCTTGGTTGACAAAGGCCGAGAGTTCTTCCTCAGCATG ACAGAGGCATATAATATTTCCCCTACTGTGGTGCATTACGGATGCTTAATCGATGTCTTA GGCCGAGCTGGGAAATTAAAGGAAGCATTGGATACAATAGACAAAATGCCCATGAAGCCC AACTCCACTATTTGGGGAACCCTGCTGGCATCCTGTAGGGTTTATGGTAATTCAGAAATA GGTGAATTGGCAGCGGAGCGTCTCCTTGAGTTGGATCCAGATAACAGCACAGCGTACATC TTGTTGTCAAACATGTATGCAAAATCTAATAGATGGAAAGATGTCCGACGGATTAGGCAG ATAATAATGGAGAAAGGAATCAAGAAAGAACCTGGTTGCAGTATGATTGAAATGAATGGC ATAATTCACGAATTTGTAGCCGCTGATAGGTCTCATCCTATGAATAAAGAAATCTACTCA AAGTTGGAAAATGTGCTAACTGATTTGAGGAATGCTGGATATGTGCCTGATGTAACTGAG GTCCTTGTTGAAGTCACGGAAGAGGAAAAGCAGAAGGTTCTTTACTGGCACAGTGAGAAG TTGGCAGTCACTTTTGCTTTACTCACTTCAGAATCTAATGTTATCATAAGAATTGTGAAA AACTTGAGGATGTGTTTGGACTGCCACAACGCAATAAAATTGATATCGAAATTGTATGGA AGAGAGGTCATTGTGAGGGATAGGACACGCTTCCATCATTTTAGACATGGATCCTGTTCA TGCAAAGACTATTGGTAA

Peptide Sequence

PEP ID	Os01t0176300-00
PEP Infomation	pep chromosome:IRGSP-1.0:1:3926661:3929467:-1 gene:Os01g0176300 transcript:Os01t0176300-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0176300-00)
Sequence	MVRALSRARSLLDGIPHRRGRAASSSVSGHGAEEAVAGYVRMLAGGARPDAYTFPSLLKA AAAARGAAVAAASVGGAIHAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEAACLA TGGGAPVMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLG MQVHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRS GQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVV TACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKF TWTAIILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSM TEAYNISPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEI GELAAERLLELDPDNSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNG IIHEFVAADRSHPMNKEIYSKLENVLTDLRNAGYVPDVTEVLVEVTEEEKQKVLYWHSEK LAVTFALLTSESNVIIRIVKNLRMCLDCHNAIKLISKLYGREVIVRDRTRFHHFRHGSCS CKDYW

Transcript Sequence

Transcript ID	Os01t0176300-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:3926661:3929467:-1 gene:Os01g0176300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0176300-00)
Sequence	GAGGAGAGGAGGTGAGGCGGATGGTCCGCGCCCTGTCACGTGCCCGCAGCCTGCTCGACG GAATTCCCCACCGGCGGGGGCGTGCTGCGAGTTCGTCCGTGTCCGGCCATGGCGCGGAGG AGGCTGTTGCGGGATACGTCCGCATGCTGGCTGGCGGGGCCAGGCCCGACGCGTACACGT TCCCGTCCTTGCTCAAGGCGGCGGCGGCGGCGCGGGGCGCGGCCGTGGCGGCGGCATCAG TTGGCGGTGCCATCCACGCGCACGTGGTTAAGTTCGGGATGGAGTCGAACGCTCACGCGG CGAGCTCCCTGATCGTCATGTACGCGGCCAGGGGAGACGGCGCCGCGGCGCGCGCGGTGC TGGAGGCGGCGTGCCTCGCCACGGGAGGGGGAGCGCCGGTCATGTGGAACGCGCTCATCT CTGGCCATAACAGGAGCGGGCGGTTCGAGCTGTCCTGCTGCTCCTTCGTGGACATGGTCA GAGCCAGCGCCATGGCCACCGCGGTCACCTACGTCTCGGTGCTCTCGGCTTGCGGGAAAG GGAAGGACCTGCTGCTGGGGATGCAGGTGCACAAGCGCGTCCTCGAGAGCGGGGTGTTGC CTGATCAGAGGGTGGAGAACGCTCTGGTTGATATGTACGCCGAGTGCGGCGACATGGACG CGGCCTGGGTGTTGTTCGAGGGCATGCAGATGAGGAGCATGGCGTCCTGGACGTCGGTAA TTTCTGGCCTTGTGAGGTCAGGCCAGGTTGATCGTGCCAGGGACCTGTTTGATCATATGC CTGAAAGAGACACCATCGCATGGACCGCGATGATCGATGGCTATGTACAGGTTGGCAGGT TCAGGGACGCATTGGAGACATTCCGTTACATGCAGATTTGCAAGGTGAGAGCAGATGAGT TCACCATGGTCAGTGTGGTCACTGCCTGTGCCCAGCTAGGTGCTCTGGAGACAGGGGAAT GGGCAAGGATTTACATGGGAAGACTTGGGATCAAGATGGATGTTTTTGTCGGGAATGCAC TCATAGACATGTACTCAAAGTGTGGGAGCATTGAGCGCGCATTGGATGTATTCAAAGATA TGCACAACAGAGATAAGTTTACCTGGACTGCCATTATACTTGGTCTCGCAGTGAATGGCC GTGGGGAGGAGGCTATTGACATGTTCTATAGAATGCTCAGGGCTTTACAAACTCCAGATG AGGTGACCTTCGTTGGTGTTCTCACTGCCTGCACTCATGCTGGCTTGGTTGACAAAGGCC GAGAGTTCTTCCTCAGCATGACAGAGGCATATAATATTTCCCCTACTGTGGTGCATTACG GATGCTTAATCGATGTCTTAGGCCGAGCTGGGAAATTAAAGGAAGCATTGGATACAATAG ACAAAATGCCCATGAAGCCCAACTCCACTATTTGGGGAACCCTGCTGGCATCCTGTAGGG TTTATGGTAATTCAGAAATAGGTGAATTGGCAGCGGAGCGTCTCCTTGAGTTGGATCCAG ATAACAGCACAGCGTACATCTTGTTGTCAAACATGTATGCAAAATCTAATAGATGGAAAG ATGTCCGACGGATTAGGCAGATAATAATGGAGAAAGGAATCAAGAAAGAACCTGGTTGCA GTATGATTGAAATGAATGGCATAATTCACGAATTTGTAGCCGCTGATAGGTCTCATCCTA TGAATAAAGAAATCTACTCAAAGTTGGAAAATGTGCTAACTGATTTGAGGAATGCTGGAT ATGTGCCTGATGTAACTGAGGTCCTTGTTGAAGTCACGGAAGAGGAAAAGCAGAAGGTTC TTTACTGGCACAGTGAGAAGTTGGCAGTCACTTTTGCTTTACTCACTTCAGAATCTAATG TTATCATAAGAATTGTGAAAAACTTGAGGATGTGTTTGGACTGCCACAACGCAATAAAAT TGATATCGAAATTGTATGGAAGAGAGGTCATTGTGAGGGATAGGACACGCTTCCATCATT TTAGACATGGATCCTGTTCATGCAAAGACTATTGGTAAGTGGTAGCACATTAATACATTA TATATGAATCATACGGACAACTGAACATCTGTAAGCAAGTGAAAACCCAAATGACCAACA AGCATTTCAGTTGAAATGTGGCAGTGACTGCAAATTTTTAGTCCAGGGAATGAAGTTAAT AATGAGAGAATATTCTTAATCCAGCTTAGCCTATACATGTTGTGCTCTCCTTAAGGCACT ATAATATCTTGGTGTAAACCTCTCTGTCGCTGATGGTTGTACTGGCAAAGTTCTTATTGA AAGGAAGAGATTTTCATGTAAGAATTTCTTGCAGTAATGTTAAATTTATCTTGTGGTCTG GAGCTAATCTGGTGCGCCGTTATGCTATTAAGCAAAGGAGGATGTCTGATGGAGCCTTAC TGTTTCATTCATAGAAAAACCAGGTATGCTTTATTTTCTCCAGTCTGCAGCTTTCATATA TTTGATTCCATTTGCTAGGCTGCTATTTGAAATTGTAATGACCCAAAACATGCATTTGAC TTGCTT