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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0172800-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:3735961:3736782:1 gene:Os01g0172800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Embryo-specific 3 family protein. (Os01t0172800-01)
Sequence

ATGGCTCGCCGTCGCCCACCACCGCAGCGCCACCACCACCTCGTCCTGCTCGCCCTCGCC
GCCTTCTCCTGCCTCGCCTCCGGGACAGCGACGCCGACGCCGACGACTTCCTCCCAATCC
CAGCAGCCTCAGCCAGCCGGCACGCTCCTCCAGCCCGCTCTCGCCGCGGACCTCGCGGCG
CGGACGTGCTGGTACACGGTGCAGATCAAGACGAGCTGCGCGTCGCCGTGGCGCACGTCG
GACGCGGTCAGCCTCGCGTTCGGGGACGCCTACCGCAACGAGGTCTACGCGGCGCGGCTG
GCCGGCTCCTCCTCCTCGCCGCAGCCGTCGTCGTCGGCCGCGTTCGAGCGGTGCGCCACC
GACACGTTCCGCGTGGGGGGCCCCTGCGGCTACGGCGTCTGCTACCTCTACCTCCGCCGC
TCCGGCCGCGACGGCTGGACGCCGCAGTGGGTCAGGGTCTACGAGCCCACCTCCGACACC
CCCTCCACCTTCTACTACGGCGACCCCCTCCCCAACGCCGTCTGGTACGGCTTCAACCGC
TGCCCCCGCCTCGCCGCCTCCGCCGCGGCGCAGTGA

Peptide Sequence

PEP ID

Os01t0172800-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:3735961:3736782:1 gene:Os01g0172800 transcript:Os01t0172800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Embryo-specific 3 family protein. (Os01t0172800-01)
Sequence

MARRRPPPQRHHHLVLLALAAFSCLASGTATPTPTTSSQSQQPQPAGTLLQPALAADLAA
RTCWYTVQIKTSCASPWRTSDAVSLAFGDAYRNEVYAARLAGSSSSPQPSSSAAFERCAT
DTFRVGGPCGYGVCYLYLRRSGRDGWTPQWVRVYEPTSDTPSTFYYGDPLPNAVWYGFNR
CPRLAASAAAQ

Transcript Sequence

Transcript ID

Os01t0172800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:3735961:3736782:1 gene:Os01g0172800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Embryo-specific 3 family protein. (Os01t0172800-01)
Sequence

ACTTGTCCGGTCAACTCTCCAGTGACCTCGCCATCTCCTCAGCCATGGCTCGCCGTCGCC
CACCACCGCAGCGCCACCACCACCTCGTCCTGCTCGCCCTCGCCGCCTTCTCCTGCCTCG
CCTCCGGGACAGCGACGCCGACGCCGACGACTTCCTCCCAATCCCAGCAGCCTCAGCCAG
CCGGCACGCTCCTCCAGCCCGCTCTCGCCGCGGACCTCGCGGCGCGGACGTGCTGGTACA
CGGTGCAGATCAAGACGAGCTGCGCGTCGCCGTGGCGCACGTCGGACGCGGTCAGCCTCG
CGTTCGGGGACGCCTACCGCAACGAGGTCTACGCGGCGCGGCTGGCCGGCTCCTCCTCCT
CGCCGCAGCCGTCGTCGTCGGCCGCGTTCGAGCGGTGCGCCACCGACACGTTCCGCGTGG
GGGGCCCCTGCGGCTACGGCGTCTGCTACCTCTACCTCCGCCGCTCCGGCCGCGACGGCT
GGACGCCGCAGTGGGTCAGGGTCTACGAGCCCACCTCCGACACCCCCTCCACCTTCTACT
ACGGCGACCCCCTCCCCAACGCCGTCTGGTACGGCTTCAACCGCTGCCCCCGCCTCGCCG
CCTCCGCCGCGGCGCAGTGATGGTTTGCGACGTCGCCGGCGAGATGAGCATGATTCGACG
ACGAGCACGTAATTTACGGTTGGGTTAATGGTTGCGTGATGTGTTACGATGTAATGTATG
ATTCGGGTTGTGTGTGTTGTAAATTTGCAATAATCCAGAGATTTATCTTTTGAGTAATTA
ATAAGAACAGATCAGATTCTGATTCTGATCTGTATGTTTGTT