Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0171800-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:3696155:3699718:-1 gene:Os01g0171800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os01t0171800-01)
Sequence

ATGCCATCATCAACCATGGCCGTCGACACCACTGCTTCGGAGTACTGGCTCAATTGGAGG
TTCATGCTCTGCGCGGTCTGGGTCTACTCCTGCATGGTCCTGGCATGCTTCTTGATCTGG
AAGTACGAGGGGCCGAGCTCACAGGACGGCAATGGCGATGGCGGCGAGGACAGTGAGGAT
GCGCGGCCGCCCCGGGCCGCATCCGGGGTTGTGTACCTTGAAGATTGCTGGAAACCATGC
CTTGAGCAGATCCACCCTGGCTGGCTGCTGGCGTTCCGCGTCGTGTCTTTCTTCATTTTA
GCCTCCCTGCTTGCGGTTGATGTCGTCGTCGATGGATGGAGTGTCTTCCTATACTACACT
CAGTGGACCTTCTTGCTAGTCACCTTATATTTTGGGCTTGGTTCGGTGCTTTCAATTTAT
GGATGCTATCAGTATTCATACAAGAATGGCGACAATAGATCTGGTGCAGATCATGGCACA
TATATCATTGCTCCAGCTGGGGAAAGTGTATATGATCAGTCAATAAAAAATCCTTGTTAC
AGTAAAATGCATGGTGGCAAAGAAATTGCAGGATTTTGGGGTTATCTGTTCCAGATCATG
TTTCAGACAAATGCAGGTGCTGTGATGATTACAGATCTGGTGTTTTGGTTTATCCTGTAC
CCTTTCCTTGCCTACAATCAATATGATATGAATTTTTTGCTGATTGGGACACACTCTATA
AATGTTGTGTTCATGATTGGTGATACTGCTATGAATAGCCTGCGTTTCCCGTGGTTTAGA
ATCGCATATTTCTTGCTGTGGACTGGCGCTTTTGTTAATGTTCAGTGGCTCATCCATGCT
AGCATATCGATTTGGTGGCCTTACCCATTTCTGGACTTAGCATTTCCTAAAGCTCCTGTA
TGGTATTTGGTGGTAGCAGTGATGCATTTCCCTTGCTATGCTTTATTCGCCCTGGTTATG
AGGCTAAAACAATCTCTGCTGGAAAGATGGTTTCCTCAGAGTTACACCTGCGTGTAG

Peptide Sequence

PEP ID

Os01t0171800-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:3696155:3699718:-1 gene:Os01g0171800 transcript:Os01t0171800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os01t0171800-01)
Sequence

MPSSTMAVDTTASEYWLNWRFMLCAVWVYSCMVLACFLIWKYEGPSSQDGNGDGGEDSED
ARPPRAASGVVYLEDCWKPCLEQIHPGWLLAFRVVSFFILASLLAVDVVVDGWSVFLYYT
QWTFLLVTLYFGLGSVLSIYGCYQYSYKNGDNRSGADHGTYIIAPAGESVYDQSIKNPCY
SKMHGGKEIAGFWGYLFQIMFQTNAGAVMITDLVFWFILYPFLAYNQYDMNFLLIGTHSI
NVVFMIGDTAMNSLRFPWFRIAYFLLWTGAFVNVQWLIHASISIWWPYPFLDLAFPKAPV
WYLVVAVMHFPCYALFALVMRLKQSLLERWFPQSYTCV

Transcript Sequence

Transcript ID

Os01t0171800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:3696155:3699718:-1 gene:Os01g0171800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os01t0171800-01)
Sequence

GATGGTTGGCTTCTTCTCGGTTTGTTCGTTCCTTGTGGTCGAGAGTGAGTGAGGTGGAGG
AGAGAGAGGAGGAGGAGGAGGAGGGGATTCATTCACGTGGCTTCCGGAGAGAGCAGGAGT
CAACGTGCGGCTTGACTCTGGAGATCTCTCTCTGTCGTCTCGCCTCGCCCAAATCAGAAG
CGAATGATGGAGGCGTCGAGGTCGTGAGAGGGAGAGGAATCGACGGAGAGAGGGAGGCGG
CGGCGGCGGCAGGAAGGTTGGAGAAGGAGAGGCAGTGGAGAAGTCAAGAACAAGAACCCA
ATCACCGAAACGCCTCATCACTGCAGCAATGCCATCATCAACCATGGCCGTCGACACCAC
TGCTTCGGAGTACTGGCTCAATTGGAGGTTCATGCTCTGCGCGGTCTGGGTCTACTCCTG
CATGGTCCTGGCATGCTTCTTGATCTGGAAGTACGAGGGGCCGAGCTCACAGGACGGCAA
TGGCGATGGCGGCGAGGACAGTGAGGATGCGCGGCCGCCCCGGGCCGCATCCGGGGTTGT
GTACCTTGAAGATTGCTGGAAACCATGCCTTGAGCAGATCCACCCTGGCTGGCTGCTGGC
GTTCCGCGTCGTGTCTTTCTTCATTTTAGCCTCCCTGCTTGCGGTTGATGTCGTCGTCGA
TGGATGGAGTGTCTTCCTATACTACACTCAGTGGACCTTCTTGCTAGTCACCTTATATTT
TGGGCTTGGTTCGGTGCTTTCAATTTATGGATGCTATCAGTATTCATACAAGAATGGCGA
CAATAGATCTGGTGCAGATCATGGCACATATATCATTGCTCCAGCTGGGGAAAGTGTATA
TGATCAGTCAATAAAAAATCCTTGTTACAGTAAAATGCATGGTGGCAAAGAAATTGCAGG
ATTTTGGGGTTATCTGTTCCAGATCATGTTTCAGACAAATGCAGGTGCTGTGATGATTAC
AGATCTGGTGTTTTGGTTTATCCTGTACCCTTTCCTTGCCTACAATCAATATGATATGAA
TTTTTTGCTGATTGGGACACACTCTATAAATGTTGTGTTCATGATTGGTGATACTGCTAT
GAATAGCCTGCGTTTCCCGTGGTTTAGAATCGCATATTTCTTGCTGTGGACTGGCGCTTT
TGTTAATGTTCAGTGGCTCATCCATGCTAGCATATCGATTTGGTGGCCTTACCCATTTCT
GGACTTAGCATTTCCTAAAGCTCCTGTATGGTATTTGGTGGTAGCAGTGATGCATTTCCC
TTGCTATGCTTTATTCGCCCTGGTTATGAGGCTAAAACAATCTCTGCTGGAAAGATGGTT
TCCTCAGAGTTACACCTGCGTGTAGCAAACAAGAACATATATAGTGTTACAATTTCCCTC
CTGCTGCATCCTGCAAATGCAAATTATATGGAGCTGCTGCTCACCGTAAATTCCTAGAAA
CCATATTGTTCAGGGTTAGATGATATTTCGTAAATTTTTTTCAGACAGCAGCTTCTTTGA
GTCAGCTGTTGTCTCCTGCTCTTTTCAATGGAGAAAACTGTACAGTCCAATATAATAATA
TATGGCATTCTCAACC