Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0170600-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:3645508:3648396:1 gene:Os01g0170600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os01t0170600-01);UspA domain containing protein. (Os01t0170600-02)
Sequence

ATGGCGTGGAGGGGGCTAGCGAGGGATGCGGCGGCGGCGTATCTCCGGCGGGGCGGCGCT
CCCGCGCACGTCTTCTCCGCGGCCTCCCGCGCTCCGGGCCCCGTTGTCGCCAACCCTGGC
GGTGAGCTCCGCGCGTTCGGGTTGTTCCGGTCGCCGATGGCCAGGCGCGCCGATGCCTTC
GAGGTCCCTTCGGCTGCTGGGAGGCACGGGGCGCAGGGCGTGTGGTCGCGCAGCTCGGTT
CCGGCGTTGGTTCGGGCTGGTGCCCCCAACTCCAGAGCTCTCCCTTTCCTCGTGGGGAGA
GTGGTTCGTGGATTCTATCCGCAGCTGTCAGGTCACAAGCTGGTAAAGGGACTTGGGATG
GGCTCCACCCTTGCTGCGACGTTTTGTTCACAGAAGGTTGCATATGCTGAAGAAGTTGCT
GAACAGCCATCAGAAGGCCTCATCGGCCCCTCAACAAAACATCAGATTAGCAAATTATGG
ACTATAATCAGGAAATATCAGCTGCCTGTTGGTTTGATTGCTTTGATCGCACTTGGTTGG
CAGAATCCATTGGGTCTTTTCATCAACGTTTTGCTTATTCTCTACAGTTCTAGGCCTAGC
CCATATTCAATATACTTGTTTCTTCAGGAGGTTCGTCATGGAGAGATGCATCAAAATCGT
GCATTTTGGAAGGAGGAGGCTGTGCTTACAAGGAAAGTTGATACTAAAGATTACAAGCTC
TTTTCCATTGGAACAGTTGAATCAGCAGACAGAGAAGTACTGCACGTCATTGGGATTCTG
GGCAACTGGTGGATCTATCGTGCATCGTATGGGAAGTGA

Peptide Sequence

PEP ID

Os01t0170600-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:3645508:3648396:1 gene:Os01g0170600 transcript:Os01t0170600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os01t0170600-01);UspA domain containing protein. (Os01t0170600-02)
Sequence

MAWRGLARDAAAAYLRRGGAPAHVFSAASRAPGPVVANPGGELRAFGLFRSPMARRADAF
EVPSAAGRHGAQGVWSRSSVPALVRAGAPNSRALPFLVGRVVRGFYPQLSGHKLVKGLGM
GSTLAATFCSQKVAYAEEVAEQPSEGLIGPSTKHQISKLWTIIRKYQLPVGLIALIALGW
QNPLGLFINVLLILYSSRPSPYSIYLFLQEVRHGEMHQNRAFWKEEAVLTRKVDTKDYKL
FSIGTVESADREVLHVIGILGNWWIYRASYGK

Transcript Sequence

Transcript ID

Os01t0170600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:3645508:3648396:1 gene:Os01g0170600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hypothetical conserved gene. (Os01t0170600-01);UspA domain containing protein. (Os01t0170600-02)
Sequence

GTTCGTCTTCCTCCGCTTCCGAAGAGACAAGGTGAGAGAGGAGGGTTTAAGCCGAGAGAG
AGAGGACGCGAAGGCGACGATGGCGTGGAGGGGGCTAGCGAGGGATGCGGCGGCGGCGTA
TCTCCGGCGGGGCGGCGCTCCCGCGCACGTCTTCTCCGCGGCCTCCCGCGCTCCGGGCCC
CGTTGTCGCCAACCCTGGCGGTGAGCTCCGCGCGTTCGGGTTGTTCCGGTCGCCGATGGC
CAGGCGCGCCGATGCCTTCGAGGTCCCTTCGGCTGCTGGGAGGCACGGGGCGCAGGGCGT
GTGGTCGCGCAGCTCGGTTCCGGCGTTGGTTCGGGCTGGTGCCCCCAACTCCAGAGCTCT
CCCTTTCCTCGTGGGGAGAGTGGTTCGTGGATTCTATCCGCAGCTGTCAGGTCACAAGCT
GGTAAAGGGACTTGGGATGGGCTCCACCCTTGCTGCGACGTTTTGTTCACAGAAGGTTGC
ATATGCTGAAGAAGTTGCTGAACAGCCATCAGAAGGCCTCATCGGCCCCTCAACAAAACA
TCAGATTAGCAAATTATGGACTATAATCAGGAAATATCAGCTGCCTGTTGGTTTGATTGC
TTTGATCGCACTTGGTTGGCAGAATCCATTGGGTCTTTTCATCAACGTTTTGCTTATTCT
CTACAGTTCTAGGCCTAGCCCATATTCAATATACTTGTTTCTTCAGGAGGTTCGTCATGG
AGAGATGCATCAAAATCGTGCATTTTGGAAGGAGGAGGCTGTGCTTACAAGGAAAGTTGA
TACTAAAGATTACAAGCTCTTTTCCATTGGAACAGTTGAATCAGCAGACAGAGAAGTACT
GCACGTCATTGGGATTCTGGGCAACTGGTGGATCTATCGTGCATCGTATGGGAAGTGAGA
GGGGTTGGTATAGCATCTCATATTCTGAGGAGCGTTTAACCAACTAGTGTGCAAACATCA
GAATGTTGACAGTAGATAACTAGAATATAGGCAGTTTCATTAGGCAACTATGGCACTAGA
TATTTTAAAAGCGATGGTGTTCAATGTAATTCTAAAATACCATCAGGGTTGAAAACAGGT
CATTCTCAAGGGGGTTGTACTGGAAGGAGTTTCCACATCTGACTTTGTAAGTTCATTTGA
AATATCTTATTCTCTTGGTCCAAGAAGACTGTTTCTTGGATGCATGAGTTAAGCTG