Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0168500-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:3505759:3510343:1 gene:Os01g0168500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AUTOPHAGY ASSOCIATED GENE 18B description:WD40 repeat-like domain containing protein. (Os01t0168500-01)
Sequence	ATGAGCTCACAAGTCTCCACATCACGGGGTTTGCCCTCCCCAAGCAAGCTTGGGACATTT GAGTCCCCTCACACATGGCAAATGTCAGGTCCTACAGGCCAGGCTGAAGCTGGTAGCAGC GATGACCAGGATATCAGGCTGTTGTCTGTTTCTTGGAATCAGGACTTTGGTTGCTTCGCT GCTGGAACCAGCAATGGCTTCAGGATCTTTAATTGTGACCCTTTTAAGGAGACTTTCAGG AGGGATCTGAAGAGTGGTGGATTTGGGATTGTTGAAATGCTGTTCCGTTGCAACATCCTT GCTCTTGTAGGTGGTGGCTCCAACGCACATTATCCACCGAACAAGGTAATGATCTGGGAT GATCACCGGAGCCATTGTATTGGAGAGTTTGCCTTCCGCTCTGATGTCCGGGCTGTAAAA TTGGGGAAGGACTACATTGTCATTGTTCTTGAGCGCAAGATATACGTTTATAACTTCACA GATTTGAAGTTGCTCCATCAGATTGAGACCCAGTCCAATCCAAAAGGATTGTGCTGCCTC TCTCATCATTCCAACACTTCAGTGTTGGCCTGCCCTGGGGTGCATCAAGGGCATGTCCGG GTTGAGCATTTTGGGTTGAAGGTGACAAGGATGATTTCAGCTCATGATTCTCACATTTCT TGCATGGCATTGACAATGGATGGCCTCCTGCTGGCAACAGCAAGCATGAAGGGTACTTTG ATAAGAATATTCAACACAATGGATGGTACTCGCCTGCAAGAGGTGCGCAGAGGGCTTGAC AAAGCAGACATATACAGCATTGCGCTATCACCCAATGTGCAGTGGTTGGCAGTGTCCAGT GACAAAGGAACTGTTCATATTTTCAGTTTAAGAGTGAGAGTTGCAGGGGAAGATGCTAGT AATGAACAGCGCAGTCTTGAAGGTCCACGGATGGATCACCAGAACTCTTCTAGTTCTATA GATCCTCTTATTCAAACGAACACTGGATCCAATGCTAGCTCATCATTGTCATTCATGAAA GGGATTCTGCCGAAGTATTTCAGTTCAGAGTGGTCATTTGCTCAGTTCCATTTACCAGAA GTCACACGTTACATAGTAGCGTTTGGTGCTCAAAACACTGTCATGATGGTTGGCCTGGAT GGCAGCTTCTACAGGTGCAGCTTTGACCAGGTTAATGGCGGGCAGATGCTGCAGAAGGAA TATTTCCGGTTTATCAAGGCTGACCTCACCCCCCTGAGGACCTCGGCCCCCTGA

Peptide Sequence

PEP ID	Os01t0168500-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:3505759:3510343:1 gene:Os01g0168500 transcript:Os01t0168500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AUTOPHAGY ASSOCIATED GENE 18B description:WD40 repeat-like domain containing protein. (Os01t0168500-01)
Sequence	MSSQVSTSRGLPSPSKLGTFESPHTWQMSGPTGQAEAGSSDDQDIRLLSVSWNQDFGCFA AGTSNGFRIFNCDPFKETFRRDLKSGGFGIVEMLFRCNILALVGGGSNAHYPPNKVMIWD DHRSHCIGEFAFRSDVRAVKLGKDYIVIVLERKIYVYNFTDLKLLHQIETQSNPKGLCCL SHHSNTSVLACPGVHQGHVRVEHFGLKVTRMISAHDSHISCMALTMDGLLLATASMKGTL IRIFNTMDGTRLQEVRRGLDKADIYSIALSPNVQWLAVSSDKGTVHIFSLRVRVAGEDAS NEQRSLEGPRMDHQNSSSSIDPLIQTNTGSNASSSLSFMKGILPKYFSSEWSFAQFHLPE VTRYIVAFGAQNTVMMVGLDGSFYRCSFDQVNGGQMLQKEYFRFIKADLTPLRTSAP

Transcript Sequence

Transcript ID	Os01t0168500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:3505759:3510343:1 gene:Os01g0168500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AUTOPHAGY ASSOCIATED GENE 18B description:WD40 repeat-like domain containing protein. (Os01t0168500-01)
Sequence	GCTTTGCCTGCCTCGCTTCGCTCGCATCACGTGGCTCCGCCTCCTCGTCTCCCTCCCCCC GCACGCATCACCATCCTCCTCCTCCTCCTCCCTCCCGCGACCACCCCGTGAGGTGTATAC GCTACATTTACAATTGATTGATCTGGCTTGTCCACCCCTCACATGAGCTCACAAGTCTCC ACATCACGGGGTTTGCCCTCCCCAAGCAAGCTTGGGACATTTGAGTCCCCTCACACATGG CAAATGTCAGGTCCTACAGGCCAGGCTGAAGCTGGTAGCAGCGATGACCAGGATATCAGG CTGTTGTCTGTTTCTTGGAATCAGGACTTTGGTTGCTTCGCTGCTGGAACCAGCAATGGC TTCAGGATCTTTAATTGTGACCCTTTTAAGGAGACTTTCAGGAGGGATCTGAAGAGTGGT GGATTTGGGATTGTTGAAATGCTGTTCCGTTGCAACATCCTTGCTCTTGTAGGTGGTGGC TCCAACGCACATTATCCACCGAACAAGGTAATGATCTGGGATGATCACCGGAGCCATTGT ATTGGAGAGTTTGCCTTCCGCTCTGATGTCCGGGCTGTAAAATTGGGGAAGGACTACATT GTCATTGTTCTTGAGCGCAAGATATACGTTTATAACTTCACAGATTTGAAGTTGCTCCAT CAGATTGAGACCCAGTCCAATCCAAAAGGATTGTGCTGCCTCTCTCATCATTCCAACACT TCAGTGTTGGCCTGCCCTGGGGTGCATCAAGGGCATGTCCGGGTTGAGCATTTTGGGTTG AAGGTGACAAGGATGATTTCAGCTCATGATTCTCACATTTCTTGCATGGCATTGACAATG GATGGCCTCCTGCTGGCAACAGCAAGCATGAAGGGTACTTTGATAAGAATATTCAACACA ATGGATGGTACTCGCCTGCAAGAGGTGCGCAGAGGGCTTGACAAAGCAGACATATACAGC ATTGCGCTATCACCCAATGTGCAGTGGTTGGCAGTGTCCAGTGACAAAGGAACTGTTCAT ATTTTCAGTTTAAGAGTGAGAGTTGCAGGGGAAGATGCTAGTAATGAACAGCGCAGTCTT GAAGGTCCACGGATGGATCACCAGAACTCTTCTAGTTCTATAGATCCTCTTATTCAAACG AACACTGGATCCAATGCTAGCTCATCATTGTCATTCATGAAAGGGATTCTGCCGAAGTAT TTCAGTTCAGAGTGGTCATTTGCTCAGTTCCATTTACCAGAAGTCACACGTTACATAGTA GCGTTTGGTGCTCAAAACACTGTCATGATGGTTGGCCTGGATGGCAGCTTCTACAGGTGC AGCTTTGACCAGGTTAATGGCGGGCAGATGCTGCAGAAGGAATATTTCCGGTTTATCAAG GCTGACCTCACCCCCCTGAGGACCTCGGCCCCCTGAACTGCGTGACGAAATCATATCACC TTGATAACTTGTATATATAAAGGTTGTGCTCAGTCCATTGTATATAAATGCCGTCCTCTC GCCGGCAAAGTTCTAGGTAGCCGGAATAAGGAGAGCTGGGTGTTCGATCGCAACCTACTT CCACCCTCATTCTGAAGCATTTGTCCCCCCGTCGAAATTGCAGCTAGTTGATTTTAGTTT TCTTTCCTTTCGATGAACACAACTTTTCACTGATATATATATATGACATAAAAGCTCAAG AATGAAATACAAATCTGAGCTTATATTGTAGTTCTACTTCTGCAAGGCC