Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0163000-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:3283266:3286357:1 gene:Os01g0163000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Leucine-rich repeat, N-terminal domain containing protein. (Os01t0163000-01)
Sequence	ATCGCGAGCTCGCTTCCATGCTTGCCGGACCAGGCGGCGGCGCTGCTCCAGCTGAAGCGA TCGTTCTCGGCGACCACCGCGTCCGCCACCGCGTTCCGGTCATGGCGCGCCGGCACCGAC TGCTGCCGCTGGGCGGGCGTCCGCTGCGACGGCGGCCGCGTCACTTTCCTCGATCTAGGC GGCCGACGCCTGCAGAGCGGCGGCCTTGACGCCGCCGTCTTCAGCCTCACGTCGCTGAGG TATCTCAACCTCGGCGGCAACGACTTCAACGCGTCACAGCTCCCGGCCACCGGATTCGAG AGGCTCACTGAGCTCACCCATCTCAACATCTCCCCACCCAGCTTCGCAGGCCAGATACCA GCAGGTATTGGAAGCCTCACCAACTTGGTTTCTCTTGATCTGTCATCTAGCATCTACATC GTCAATCAAGGAGATGACGATGTCAGTATCATGTCAAATTTGTTACCCCCCTGGGGCTTC TCGAGGGTAAACTTCGAGAAGTTGATTGCAAATCTTGGTAATCTGAGGGAGCTCTATCTT GGATTGGTGTACATGTCCAACGGAGGCGAAGGGTGGTGCAATGCTCTGGCTAATTCCACT CCTAAGATTCAGGTTCTGAGCCTACCATTATGCCAGATCTCTGGTCCCATTTGCCAATCT CTGTTTAGTTTGCGATCCCTTTCTGTTGTTGACTTGCAAGGAAATGACCTGTCTGGTGCC ATACCTGAATTCTTCGCTGATTTGTCATCCCTTAGTGTTCTTCAGCTTTCAAGAAATAAG TTTGAGGGTTTGTTTCCACAAAGGATCTTCCAGAACAGAAAACTGACAGCTATTGATATT AGCTACAACTATGAAGTTTATGGTGATTTGCCCAATTTTCCACCTAATAGCAGTTTGATC AAATTGCATGTCAGTGGCACCAAGTTCTCAGGTTACATACCAAGCTCTATTTCTAATCTC ACGGATCTGAAGGAGCTGAGTCTGAGTGCAAATAATTTCCCTACAGAACTGCCGTCTTCT CTAGGAATGCTTAAATCCTTGAACTTATTTGAGGTTTCGGGGCTCGGCCTAGTAGGATCA ATGCCAGCTTGGATAACAAATCTAACATCTTTGACAGATCTCCAAATTTCTCATTGTGGT TTGTCTGGATCTTTACCATCTTCCATAGGCAATCTCAAGAATCTCAGAAGAATGTCTTTA TTCAAGAGCAACTTCACTGGAAACATACCATTGCAAATCTTTAACTTGACACAACTGCAT AGCTTGCATCTTCCACTAAACAACTTCGTGGGGACAGTGGAACTTACCTCATTCTGGAGA CTACCATACTTATCACACCTTGATCTTTCAAATAATAAATTATCTGTGGTGGACGGGTTA GTCAATGATTCAGCAGTGTCCTCTCCCAAAGTAAAATTCTTGAGCCTAGCTTCCTGCAAC ATATCAAAGTTTCCCAATGCATTAAGACATCAAGATAAGATAATCTTCCTTGACCTTTCA AATAACCAAATGAATGGGGCAATACCTCCATGGGCATGGGAAACTTGGAAAGAATCGTTC TTCTTGGACCTATCAAATAACAAATTTACCAGTCTTGGACATGACACGTTGCTCCCCCTG TACACAAGATATATCAATCTCAGTTATAATATGTTTGAAGGACCCATACCTATACCTAAA GAGAGTACAGACTCTCAGTTGGATTACTCGAATAATCGGTTTTCTTCTATGCCGTTTGAT CTAATTCCATATCTTGCTGGTACACTATCTCTAAAGGTCTCTATGAACAATGTCTCTGGA GAAGTCCCATCAACATTTTGTACTGTTAAGAGTCTCCAAATCCTTGACCTTTCCTACAAT ATCTTAAATGGCTCAATTCCTTCCTGTCTGATGGAGAATTCATCAACACTAAAAATATTA AATTTGAGGGGAAATGAACTTCGCGGAGAGTTGCCACATAATATGAAGGAAGACTGTGCA TTTGAGGCATTGGATGTCAGCTATAATTGGATTGAAGGGACACTACCTAAATCATTAGTA ACTTGCAAAAACTTGGTGGTACTTAATGTTGCGAACAATCAAATTGGAGGCTCTTTTCCA TGTTGGATGCATCTTCTTCCTAAACTCCAAGTCCTTGTCCTGAAGTCCAATAAGTTCTAC GGGCCGTTGGGGCCTACTCTTGCTAAAGATGATGAATGTGAACTACAGTATCTCCGAATT CTTGATCTAGCTTCAAACAACTTCTCGGGAGTATTGCCTTATGAATGGTTTAGGAAACTA AAATCCATGATGTCAGTCTCCATTAACGAAACATTGGTCATGAAAGATGGAGATATGTAC AGCACATTTAACCATATAACATATCTTTTTACTGCTAGATTTACATATAAAGGACTGGAC ATGATGTTTCCTAAGATCTTAAAGACCTTTGTACTAATTGATGTCTCAAATAATAGATTC CATGGCAGCATTCCTGAAACTATTGCCACACTAAGCATGCTCAATGGTCTCAACATGTCA CATAATGCTCTTACAGGACCAATTCCCAACCAGCTTGCTAGTCTGCATCAACTTGAGTCT TTGGACCTCTCATCAAATAAGCTTTCTGGGGAGATCCCTCAAAAATTAGCATCCTTGGAC TTCCTATCAACATTGAACCTATCCGATAATATGCTGGAGGGAAGAATACCGGAGTCACCT CATTTCTTGACACTCCCCAATAGTTCATTTATACGAAATGCTGGTTTGTGTGGGCCTCCA TTGTCGAAAGAATGCAGCAACAAATCAACATCAAATGTGATGCCACACCTTTCCGAAGAG AAATCTGCAGACATTATACTATTTCTCTTTGTTGGATTGGGTTTTGGTGTTGGGTTTGCT ATTGCAATTGTAGTGAGGAAACCTTGCATTGGCAAATAA

Peptide Sequence

PEP ID	Os01t0163000-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:3283266:3286357:1 gene:Os01g0163000 transcript:Os01t0163000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Leucine-rich repeat, N-terminal domain containing protein. (Os01t0163000-01)
Sequence	IASSLPCLPDQAAALLQLKRSFSATTASATAFRSWRAGTDCCRWAGVRCDGGRVTFLDLG GRRLQSGGLDAAVFSLTSLRYLNLGGNDFNASQLPATGFERLTELTHLNISPPSFAGQIP AGIGSLTNLVSLDLSSSIYIVNQGDDDVSIMSNLLPPWGFSRVNFEKLIANLGNLRELYL GLVYMSNGGEGWCNALANSTPKIQVLSLPLCQISGPICQSLFSLRSLSVVDLQGNDLSGA IPEFFADLSSLSVLQLSRNKFEGLFPQRIFQNRKLTAIDISYNYEVYGDLPNFPPNSSLI KLHVSGTKFSGYIPSSISNLTDLKELSLSANNFPTELPSSLGMLKSLNLFEVSGLGLVGS MPAWITNLTSLTDLQISHCGLSGSLPSSIGNLKNLRRMSLFKSNFTGNIPLQIFNLTQLH SLHLPLNNFVGTVELTSFWRLPYLSHLDLSNNKLSVVDGLVNDSAVSSPKVKFLSLASCN ISKFPNALRHQDKIIFLDLSNNQMNGAIPPWAWETWKESFFLDLSNNKFTSLGHDTLLPL YTRYINLSYNMFEGPIPIPKESTDSQLDYSNNRFSSMPFDLIPYLAGTLSLKVSMNNVSG EVPSTFCTVKSLQILDLSYNILNGSIPSCLMENSSTLKILNLRGNELRGELPHNMKEDCA FEALDVSYNWIEGTLPKSLVTCKNLVVLNVANNQIGGSFPCWMHLLPKLQVLVLKSNKFY GPLGPTLAKDDECELQYLRILDLASNNFSGVLPYEWFRKLKSMMSVSINETLVMKDGDMY STFNHITYLFTARFTYKGLDMMFPKILKTFVLIDVSNNRFHGSIPETIATLSMLNGLNMS HNALTGPIPNQLASLHQLESLDLSSNKLSGEIPQKLASLDFLSTLNLSDNMLEGRIPESP HFLTLPNSSFIRNAGLCGPPLSKECSNKSTSNVMPHLSEEKSADIILFLFVGLGFGVGFA IAIVVRKPCIGK

Transcript Sequence

Transcript ID	Os01t0163000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:3283266:3286357:1 gene:Os01g0163000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Leucine-rich repeat, N-terminal domain containing protein. (Os01t0163000-01)
Sequence	GATCGCGAGCTCGCTTCCATGCTTGCCGGACCAGGCGGCGGCGCTGCTCCAGCTGAAGCG ATCGTTCTCGGCGACCACCGCGTCCGCCACCGCGTTCCGGTCATGGCGCGCCGGCACCGA CTGCTGCCGCTGGGCGGGCGTCCGCTGCGACGGCGGCCGCGTCACTTTCCTCGATCTAGG CGGCCGACGCCTGCAGAGCGGCGGCCTTGACGCCGCCGTCTTCAGCCTCACGTCGCTGAG GTATCTCAACCTCGGCGGCAACGACTTCAACGCGTCACAGCTCCCGGCCACCGGATTCGA GAGGCTCACTGAGCTCACCCATCTCAACATCTCCCCACCCAGCTTCGCAGGCCAGATACC AGCAGGTATTGGAAGCCTCACCAACTTGGTTTCTCTTGATCTGTCATCTAGCATCTACAT CGTCAATCAAGGAGATGACGATGTCAGTATCATGTCAAATTTGTTACCCCCCTGGGGCTT CTCGAGGGTAAACTTCGAGAAGTTGATTGCAAATCTTGGTAATCTGAGGGAGCTCTATCT TGGATTGGTGTACATGTCCAACGGAGGCGAAGGGTGGTGCAATGCTCTGGCTAATTCCAC TCCTAAGATTCAGGTTCTGAGCCTACCATTATGCCAGATCTCTGGTCCCATTTGCCAATC TCTGTTTAGTTTGCGATCCCTTTCTGTTGTTGACTTGCAAGGAAATGACCTGTCTGGTGC CATACCTGAATTCTTCGCTGATTTGTCATCCCTTAGTGTTCTTCAGCTTTCAAGAAATAA GTTTGAGGGTTTGTTTCCACAAAGGATCTTCCAGAACAGAAAACTGACAGCTATTGATAT TAGCTACAACTATGAAGTTTATGGTGATTTGCCCAATTTTCCACCTAATAGCAGTTTGAT CAAATTGCATGTCAGTGGCACCAAGTTCTCAGGTTACATACCAAGCTCTATTTCTAATCT CACGGATCTGAAGGAGCTGAGTCTGAGTGCAAATAATTTCCCTACAGAACTGCCGTCTTC TCTAGGAATGCTTAAATCCTTGAACTTATTTGAGGTTTCGGGGCTCGGCCTAGTAGGATC AATGCCAGCTTGGATAACAAATCTAACATCTTTGACAGATCTCCAAATTTCTCATTGTGG TTTGTCTGGATCTTTACCATCTTCCATAGGCAATCTCAAGAATCTCAGAAGAATGTCTTT ATTCAAGAGCAACTTCACTGGAAACATACCATTGCAAATCTTTAACTTGACACAACTGCA TAGCTTGCATCTTCCACTAAACAACTTCGTGGGGACAGTGGAACTTACCTCATTCTGGAG ACTACCATACTTATCACACCTTGATCTTTCAAATAATAAATTATCTGTGGTGGACGGGTT AGTCAATGATTCAGCAGTGTCCTCTCCCAAAGTAAAATTCTTGAGCCTAGCTTCCTGCAA CATATCAAAGTTTCCCAATGCATTAAGACATCAAGATAAGATAATCTTCCTTGACCTTTC AAATAACCAAATGAATGGGGCAATACCTCCATGGGCATGGGAAACTTGGAAAGAATCGTT CTTCTTGGACCTATCAAATAACAAATTTACCAGTCTTGGACATGACACGTTGCTCCCCCT GTACACAAGATATATCAATCTCAGTTATAATATGTTTGAAGGACCCATACCTATACCTAA AGAGAGTACAGACTCTCAGTTGGATTACTCGAATAATCGGTTTTCTTCTATGCCGTTTGA TCTAATTCCATATCTTGCTGGTACACTATCTCTAAAGGTCTCTATGAACAATGTCTCTGG AGAAGTCCCATCAACATTTTGTACTGTTAAGAGTCTCCAAATCCTTGACCTTTCCTACAA TATCTTAAATGGCTCAATTCCTTCCTGTCTGATGGAGAATTCATCAACACTAAAAATATT AAATTTGAGGGGAAATGAACTTCGCGGAGAGTTGCCACATAATATGAAGGAAGACTGTGC ATTTGAGGCATTGGATGTCAGCTATAATTGGATTGAAGGGACACTACCTAAATCATTAGT AACTTGCAAAAACTTGGTGGTACTTAATGTTGCGAACAATCAAATTGGAGGCTCTTTTCC ATGTTGGATGCATCTTCTTCCTAAACTCCAAGTCCTTGTCCTGAAGTCCAATAAGTTCTA CGGGCCGTTGGGGCCTACTCTTGCTAAAGATGATGAATGTGAACTACAGTATCTCCGAAT TCTTGATCTAGCTTCAAACAACTTCTCGGGAGTATTGCCTTATGAATGGTTTAGGAAACT AAAATCCATGATGTCAGTCTCCATTAACGAAACATTGGTCATGAAAGATGGAGATATGTA CAGCACATTTAACCATATAACATATCTTTTTACTGCTAGATTTACATATAAAGGACTGGA CATGATGTTTCCTAAGATCTTAAAGACCTTTGTACTAATTGATGTCTCAAATAATAGATT CCATGGCAGCATTCCTGAAACTATTGCCACACTAAGCATGCTCAATGGTCTCAACATGTC ACATAATGCTCTTACAGGACCAATTCCCAACCAGCTTGCTAGTCTGCATCAACTTGAGTC TTTGGACCTCTCATCAAATAAGCTTTCTGGGGAGATCCCTCAAAAATTAGCATCCTTGGA CTTCCTATCAACATTGAACCTATCCGATAATATGCTGGAGGGAAGAATACCGGAGTCACC TCATTTCTTGACACTCCCCAATAGTTCATTTATACGAAATGCTGGTTTGTGTGGGCCTCC ATTGTCGAAAGAATGCAGCAACAAATCAACATCAAATGTGATGCCACACCTTTCCGAAGA GAAATCTGCAGACATTATACTATTTCTCTTTGTTGGATTGGGTTTTGGTGTTGGGTTTGC TATTGCAATTGTAGTGAGGAAACCTTGCATTGGCAAATAATCTTCATCAAATCCACCCAT TTTTATATTTATATGTTCAGGAGTTTGCCAGTCTGCTTCCCCTTGTAAATTTAGCTGTCA TTATAGTTAGCCTGTATGATTTATAGTACTATGTGCACGTACAACATTTTTTTCCATCAT CATGCATCCTATAAGATTAGTATTGAAAATTT