Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0159300-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:3100294:3105226:-1 gene:Os01g0159300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0159300-01)
Sequence

ATGGCTAGACACCATGGAAACCATTCCCTACTGCCAGAGATGGTTCAACCCAATAATGAG
CAACTCAACCAACCTCTGCCTTTAGGTCAGAAGTTATTTGTGCATGCTGGAAATGATGCA
GCCCTTAAAATTGGCCCTTCATACCATGGGAATGTGGCAATTAGATCGAATGATCTTCCA
TCTTCAAGTCGAGTGGCACAATATTCAGGTCATAGAGTTAAAAACACAGGAACCTTACAT
AACTCCTATGTTCACTATCCTGCTGGAAGCTCTGGTGGCCATGTATCCTACAATCCTCAA
ACTGAACCTGTTATAACTTATCCACATAGATCTGAGGGAGAATTTGCTCGAGGGAGTTCC
CAAATCGACAACAGAACTGCTGCAGTGAAACGAAAAAATCCTGTCATTTATCCAGAGTAT
AGCATCAATGGTGATGGTTATTGTGCCGGTAGCTCATCAAGTACCCAGTTCTCTAATTAT
CCACAGCCAGCTCCATTTTCTGAGTCCTTGCATCGTCAAATGCCTCCAAGTGTTGGCCCA
ATTAATTGGAATGACCAGAGCTTGGTAAATCAAGAAGGAAGTCAGAGAAATGTGAGGGCA
CGTCATAATTTTAATAATATTTCATTGGAACCTAGACCAGTCCATTCTACTTCGAATGTT
TCCCAAAGTACATCAATGAAAAGGAATGGACCATCCTTTTCTACGCGAATGAGAACTATG
CCTTCAGGTGCCTCTGGAATGCACTCTGGAGAAATGCCTTACACTATGGGAAGCAGCAAC
TCATCTGTTCCTGTCCCAACTTTACAAGGCTCTTCAAGCAGTGCAATATTTGCCAGTGGT
GTCTTTGCACCTAGGCATGTTCATGGTGACACTGTTCCTAGCTACATTCATCTGCCTTCT
GTAGCATCCTCTAGCTCTACAGCGATTCCCCATGAGGTGATCATTCCGAGCTACCAACCT
GCTACCTCTGCAACTACCTCAACACCCATGAGGGCCAGTCAGCCATTACCTGTCAGAGCT
GTTGCATCTTCTAGACATGCAAGGAATGTACTCATAGGGCATGCTAACAGCGGAAGGAAC
AGAAGGGCGAGAAGCTCATACTATGGTATTCAGCCTTTGATGATTGATGCACAGCAATTG
ATAATGATGCAACAATTTGCTCTCCGCGAATCAAGAGAAGCACAAGACCCCCACAGGGCC
ATGAGACTGGACATTGACAATATGAGTTATGAGGACCTGCTGGCTTTGGGAGAATCTATT
GGTAATGTCTGCACAGGCTTGGTGGACGAGAAAATCTCAGGTTGTGTGAGAGAAGTGATC
TATTGCAGTTCTGATGAACAGCAAAATGATCAAGATGATGGGAAATGTGCAATTTGTCTG
GAGGAATACAAAGACAACAGTTTGCTGGGAATACTGAAATGCAATCACGACTTCCACACC
GACTGCGTCAAGAAGTGGTTGAAGGAGAAGAACTCATGCCCAATTTGCAAGTCGGCTGCT
GCATAG

Peptide Sequence

PEP ID

Os01t0159300-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:3100294:3105226:-1 gene:Os01g0159300 transcript:Os01t0159300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0159300-01)
Sequence

MARHHGNHSLLPEMVQPNNEQLNQPLPLGQKLFVHAGNDAALKIGPSYHGNVAIRSNDLP
SSSRVAQYSGHRVKNTGTLHNSYVHYPAGSSGGHVSYNPQTEPVITYPHRSEGEFARGSS
QIDNRTAAVKRKNPVIYPEYSINGDGYCAGSSSSTQFSNYPQPAPFSESLHRQMPPSVGP
INWNDQSLVNQEGSQRNVRARHNFNNISLEPRPVHSTSNVSQSTSMKRNGPSFSTRMRTM
PSGASGMHSGEMPYTMGSSNSSVPVPTLQGSSSSAIFASGVFAPRHVHGDTVPSYIHLPS
VASSSSTAIPHEVIIPSYQPATSATTSTPMRASQPLPVRAVASSRHARNVLIGHANSGRN
RRARSSYYGIQPLMIDAQQLIMMQQFALRESREAQDPHRAMRLDIDNMSYEDLLALGESI
GNVCTGLVDEKISGCVREVIYCSSDEQQNDQDDGKCAICLEEYKDNSLLGILKCNHDFHT
DCVKKWLKEKNSCPICKSAAA

Transcript Sequence

Transcript ID

Os01t0159300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:3100294:3105226:-1 gene:Os01g0159300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0159300-01)
Sequence

TACTCCACACCGCACAGACAAATACTCTACGAGAGAGAGAGAGAGAGAGAATTTTAATTT
TAGGAGAAAACTGTGGCCGCGTGCGTCGCGTCTCCTCCTATCTTCTCCCCGAAGCTTCCG
TATCGCGGGCGCCTCCTTCCTTTCCCCCTCTATCTATCTACTCCCTTGGAAATTTATTCG
GTCGCGTGGGGTTTGGATCGGTGGATCGATCGATCGATCGAGCGAGCGAACGACGACTTG
TGAGCAGGTTAAGGACAGGCATACTGGACTGACTGTTTTATGGCTAGACACCATGGAAAC
CATTCCCTACTGCCAGAGATGGTTCAACCCAATAATGAGCAACTCAACCAACCTCTGCCT
TTAGGTCAGAAGTTATTTGTGCATGCTGGAAATGATGCAGCCCTTAAAATTGGCCCTTCA
TACCATGGGAATGTGGCAATTAGATCGAATGATCTTCCATCTTCAAGTCGAGTGGCACAA
TATTCAGGTCATAGAGTTAAAAACACAGGAACCTTACATAACTCCTATGTTCACTATCCT
GCTGGAAGCTCTGGTGGCCATGTATCCTACAATCCTCAAACTGAACCTGTTATAACTTAT
CCACATAGATCTGAGGGAGAATTTGCTCGAGGGAGTTCCCAAATCGACAACAGAACTGCT
GCAGTGAAACGAAAAAATCCTGTCATTTATCCAGAGTATAGCATCAATGGTGATGGTTAT
TGTGCCGGTAGCTCATCAAGTACCCAGTTCTCTAATTATCCACAGCCAGCTCCATTTTCT
GAGTCCTTGCATCGTCAAATGCCTCCAAGTGTTGGCCCAATTAATTGGAATGACCAGAGC
TTGGTAAATCAAGAAGGAAGTCAGAGAAATGTGAGGGCACGTCATAATTTTAATAATATT
TCATTGGAACCTAGACCAGTCCATTCTACTTCGAATGTTTCCCAAAGTACATCAATGAAA
AGGAATGGACCATCCTTTTCTACGCGAATGAGAACTATGCCTTCAGGTGCCTCTGGAATG
CACTCTGGAGAAATGCCTTACACTATGGGAAGCAGCAACTCATCTGTTCCTGTCCCAACT
TTACAAGGCTCTTCAAGCAGTGCAATATTTGCCAGTGGTGTCTTTGCACCTAGGCATGTT
CATGGTGACACTGTTCCTAGCTACATTCATCTGCCTTCTGTAGCATCCTCTAGCTCTACA
GCGATTCCCCATGAGGTGATCATTCCGAGCTACCAACCTGCTACCTCTGCAACTACCTCA
ACACCCATGAGGGCCAGTCAGCCATTACCTGTCAGAGCTGTTGCATCTTCTAGACATGCA
AGGAATGTACTCATAGGGCATGCTAACAGCGGAAGGAACAGAAGGGCGAGAAGCTCATAC
TATGGTATTCAGCCTTTGATGATTGATGCACAGCAATTGATAATGATGCAACAATTTGCT
CTCCGCGAATCAAGAGAAGCACAAGACCCCCACAGGGCCATGAGACTGGACATTGACAAT
ATGAGTTATGAGGACCTGCTGGCTTTGGGAGAATCTATTGGTAATGTCTGCACAGGCTTG
GTGGACGAGAAAATCTCAGGTTGTGTGAGAGAAGTGATCTATTGCAGTTCTGATGAACAG
CAAAATGATCAAGATGATGGGAAATGTGCAATTTGTCTGGAGGAATACAAAGACAACAGT
TTGCTGGGAATACTGAAATGCAATCACGACTTCCACACCGACTGCGTCAAGAAGTGGTTG
AAGGAGAAGAACTCATGCCCAATTTGCAAGTCGGCTGCTGCATAGGACACGCGAGGACAA
ACAACAATATGGTCCTCAAATTTGTTAGTATTTAGACCCAATTAAGTTGTTTCATTCTTT
GTGCGCCTCAGCCATGTAAATAAGTAAGTTTGCTAACATTAAATTATTTTGTGTGTTACC
ATAGCTGATATCCTTTTATATGTATTAACTATTAAAATGCCAATTTTTAATTCATTTAAT
CATATGAAGTGGTTTACATT