Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0158100-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:3052241:3053151:-1 gene:Os01g0158100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat containing protein. (Os01t0158100-01)
Sequence

ATGGCGTCCCTCCTCTCCCTCCCGCGTCTCACTCTCACCCCGACCCCACGCGCGAACCCC
GGCCGCCGCAGCGCCCGCCCCACGCCGGCGAGCATCACCTGCGGCCCGCGCGACAACCGC
GGCCCGCTCCAGCGCGGCCGCTCCCTCTCCACGGAGGCCATCCTCGCCGTGCAATCCCTC
AAGCGCCTCACCTCCTCCGACCGCTCCCCGGCCGCCGCCGCCGCCGCGGCCTCGACCTCC
CTCGGCCGCCTCCTCAAGGGCGACCTCCTCGCCGCCATGGCCGAGCTCCAGCGCCAGGGC
CACTGGTCCCTCGCCCTCGCCGCGCTCCACGTCGCCCGCGCCGAGCCCTGGTACCGCCCC
GACCCGGCCCTCTACGCCACGTTCGTCTCCTCCTCGCCGGCCACCGAGGACGGCGCCGCC
GCCGTGGACGCGCTCGTGGAGGCGTTCCTGGAGGAGAAGGAGCGGGGCGGCGGGTTCGTG
GATGGGGAGGAGGACGTGTACAAGCTGACGCGGCTGGTGCGCGCGCTGGTGGCGAAGGGG
AGGGCGCGCGCGGCGTGGAGGGTGTACGAGGCGGCGGTGAGGATGGGAGGCTGCGAGGTG
GACGAGTACATGTACAGGGTGATGGCGAGGGGGATGAAGCGGCTGGGCTTCGAGGCGGAG
GCGGCGGAGGTGGAGGCGGACCTCCGGGAGTGGGAGGCCAGGATCTCGCCGCCGGCCAGA
GACGTGCTCGACGAAATGCGCGCGCGAGAGGAGCAGCACAACTGCGGCTTAACTGTAAAT
CTGATTATCGTTTTAGAAACCTGA

Peptide Sequence

PEP ID

Os01t0158100-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:3052241:3053151:-1 gene:Os01g0158100 transcript:Os01t0158100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat containing protein. (Os01t0158100-01)
Sequence

MASLLSLPRLTLTPTPRANPGRRSARPTPASITCGPRDNRGPLQRGRSLSTEAILAVQSL
KRLTSSDRSPAAAAAAASTSLGRLLKGDLLAAMAELQRQGHWSLALAALHVARAEPWYRP
DPALYATFVSSSPATEDGAAAVDALVEAFLEEKERGGGFVDGEEDVYKLTRLVRALVAKG
RARAAWRVYEAAVRMGGCEVDEYMYRVMARGMKRLGFEAEAAEVEADLREWEARISPPAR
DVLDEMRAREEQHNCGLTVNLIIVLET

Transcript Sequence

Transcript ID

Os01t0158100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:3052241:3053151:-1 gene:Os01g0158100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat containing protein. (Os01t0158100-01)
Sequence

GCTTCCGCTTCCGCTCTCTTCTCCGCACCTCATGGCGTCCCTCCTCTCCCTCCCGCGTCT
CACTCTCACCCCGACCCCACGCGCGAACCCCGGCCGCCGCAGCGCCCGCCCCACGCCGGC
GAGCATCACCTGCGGCCCGCGCGACAACCGCGGCCCGCTCCAGCGCGGCCGCTCCCTCTC
CACGGAGGCCATCCTCGCCGTGCAATCCCTCAAGCGCCTCACCTCCTCCGACCGCTCCCC
GGCCGCCGCCGCCGCCGCGGCCTCGACCTCCCTCGGCCGCCTCCTCAAGGGCGACCTCCT
CGCCGCCATGGCCGAGCTCCAGCGCCAGGGCCACTGGTCCCTCGCCCTCGCCGCGCTCCA
CGTCGCCCGCGCCGAGCCCTGGTACCGCCCCGACCCGGCCCTCTACGCCACGTTCGTCTC
CTCCTCGCCGGCCACCGAGGACGGCGCCGCCGCCGTGGACGCGCTCGTGGAGGCGTTCCT
GGAGGAGAAGGAGCGGGGCGGCGGGTTCGTGGATGGGGAGGAGGACGTGTACAAGCTGAC
GCGGCTGGTGCGCGCGCTGGTGGCGAAGGGGAGGGCGCGCGCGGCGTGGAGGGTGTACGA
GGCGGCGGTGAGGATGGGAGGCTGCGAGGTGGACGAGTACATGTACAGGGTGATGGCGAG
GGGGATGAAGCGGCTGGGCTTCGAGGCGGAGGCGGCGGAGGTGGAGGCGGACCTCCGGGA
GTGGGAGGCCAGGATCTCGCCGCCGGCCAGAGACGTGCTCGACGAAATGCGCGCGCGAGA
GGAGCAGCACAACTGCGGCTTAACTGTAAATCTGATTATCGTTTTAGAAACCTGAGGATT
ATTAAAGTCGTAGCTGCTTCTCTTCTTTTTTTTTTACTGCAATTTTTGCAAAGAAAGTAA
AGTGTTCTGCT