Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0151900-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:2805586:2808152:1 gene:Os01g0151900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0151900-01)
Sequence

ATGCCGCCGCCGCGGGCGTCCGCCATCCTCTCCGCCGCCTGCAGGTCCAGCAGGACGCTC
TTCGTTATTAGGAGGCTCGGCTTCCTTGGTTCCTGCACGCCAACTGTTCGTCAGAATGCC
TCAGTGGAGCTTCCCGGGGCAGGCTTATATCCACGCTTTCACCAGAGCATTCTCCCAATT
CACTGCGTTGTTGGATCTCTACGGCTTTGTCATTCTACCGCTTTGGATGGTTCCAAGGAT
GTCCATGTCAGCGAAATCGTTAAAATCCTCAAGTCTAGAGATGGCGACAGTGAGCTCGCC
GAAGTTCTCAATCAATTTGCAGACGAGATGGATGAGGATGTTGTGCTAAAGGTGCTCCAG
AAGCAGAGGTCCAATTGGAAAGTCGCACTATCTTTCTTCAAATGGGCAGCTGGTCTGCCC
CAGTATAACCATGGGTCAAGGGCCTACACGGAGATGCTTGACATTCTTGGGAGGATGAAG
AAGGTCAGGCTCATGAGACAACTGTTTGATGAGATTCCTGTGGAGAGCCGCCAGTCAGTG
GTCACAAACAGGATGTTTGCTGTCCTGTTAAACCGGTATGCAGGCGCGCACAAGGTGCAG
GAGGCGATAGATATGTTCTACAAGAGGAAGGATTATGGGTTTGAGCTTGACTTGGTTGGA
TTCCAGATACTTTTGATGTCTCTCTGTCGGTACAAGCATGTTGAGGAAGCAGAGGCCCTC
TTTCTCCAAAAGAAAGATGAGTTCCCTCCTGTCATAAAGAGCTGGAACATCATTCTTAAT
GGTTGGTGTGTCAAGGGAAGCTTGGCAGACGCTAAAAGGGTTTGGAATGAGATAATTGCG
TCTAAGCTTAAGCCTGACCTGTTCACCTATGGTACATTCATAAATTCGCTTACAAAATCT
GGCAAACTTAGTACTGCAGTAAAACTATTTACAAGCATGTGGGAGAAAGGGATCAATCCT
GATGTGGCAATTTGTAATTGTATCATCGATCAATTGTGCTTCAAGAAAAGGATTCCAGAA
GCACTTGAGATTTTTGGTGAGATGAATGATCGTGGTTGTCAGGCCGATGTTGCTACCTAC
AACACTTTGATAAAACACTTCTGTAAGATTAATCGGATGGAGAAAGTCTATGAGCTTTTG
GATGACATGGAGGTTAAGGGCGTCTCTCCAAACAATATGACATACTCCTACATTCTGAAG
ACGACAGAGAAACCCAAAGATGTTATTTCATTGATGCAGAGAATGGAGAAGTCTGGTTGC
AGACTGGACTCTGATACATATAACTTAATATTGAACCTTTATGTCAGTTGGGATTATGAG
AAAGGGGTTCAGCTAGTATGGGATGAAATGGAGAGGAATGGATCAGGCCCGGATCAACGA
TCATTTACTATAATGGTTCATGGACTCCATTCCCACGATAAACTGGATGAGGCTTTGCAT
TATTATAGAACGATGGAGTCGAGAGGGATGACACCAGAACCAAGGACGAAGCTATTGGTA
AAAGCAATACGTATGAAGAAAGATGAACCTGCTACAGAAGAACCTCTTACCAGGAAGAAT
CTAAAATTGGATCCAATTTCAAGACTATTCCATGTTCGTAAATAG

Peptide Sequence

PEP ID

Os01t0151900-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:2805586:2808152:1 gene:Os01g0151900 transcript:Os01t0151900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0151900-01)
Sequence

MPPPRASAILSAACRSSRTLFVIRRLGFLGSCTPTVRQNASVELPGAGLYPRFHQSILPI
HCVVGSLRLCHSTALDGSKDVHVSEIVKILKSRDGDSELAEVLNQFADEMDEDVVLKVLQ
KQRSNWKVALSFFKWAAGLPQYNHGSRAYTEMLDILGRMKKVRLMRQLFDEIPVESRQSV
VTNRMFAVLLNRYAGAHKVQEAIDMFYKRKDYGFELDLVGFQILLMSLCRYKHVEEAEAL
FLQKKDEFPPVIKSWNIILNGWCVKGSLADAKRVWNEIIASKLKPDLFTYGTFINSLTKS
GKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKRIPEALEIFGEMNDRGCQADVATY
NTLIKHFCKINRMEKVYELLDDMEVKGVSPNNMTYSYILKTTEKPKDVISLMQRMEKSGC
RLDSDTYNLILNLYVSWDYEKGVQLVWDEMERNGSGPDQRSFTIMVHGLHSHDKLDEALH
YYRTMESRGMTPEPRTKLLVKAIRMKKDEPATEEPLTRKNLKLDPISRLFHVRK

Transcript Sequence

Transcript ID

Os01t0151900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:2805586:2808152:1 gene:Os01g0151900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os01t0151900-01)
Sequence

GAGAGCGCTCTGGTACCCGTTCCCTCCGCCGCTCTCGTGCTCATCTCCGGTACGATGCCG
CCGCCGCGGGCGTCCGCCATCCTCTCCGCCGCCTGCAGGTCCAGCAGGACGCTCTTCGTT
ATTAGGAGGCTCGGCTTCCTTGGTTCCTGCACGCCAACTGTTCGTCAGAATGCCTCAGTG
GAGCTTCCCGGGGCAGGCTTATATCCACGCTTTCACCAGAGCATTCTCCCAATTCACTGC
GTTGTTGGATCTCTACGGCTTTGTCATTCTACCGCTTTGGATGGTTCCAAGGATGTCCAT
GTCAGCGAAATCGTTAAAATCCTCAAGTCTAGAGATGGCGACAGTGAGCTCGCCGAAGTT
CTCAATCAATTTGCAGACGAGATGGATGAGGATGTTGTGCTAAAGGTGCTCCAGAAGCAG
AGGTCCAATTGGAAAGTCGCACTATCTTTCTTCAAATGGGCAGCTGGTCTGCCCCAGTAT
AACCATGGGTCAAGGGCCTACACGGAGATGCTTGACATTCTTGGGAGGATGAAGAAGGTC
AGGCTCATGAGACAACTGTTTGATGAGATTCCTGTGGAGAGCCGCCAGTCAGTGGTCACA
AACAGGATGTTTGCTGTCCTGTTAAACCGGTATGCAGGCGCGCACAAGGTGCAGGAGGCG
ATAGATATGTTCTACAAGAGGAAGGATTATGGGTTTGAGCTTGACTTGGTTGGATTCCAG
ATACTTTTGATGTCTCTCTGTCGGTACAAGCATGTTGAGGAAGCAGAGGCCCTCTTTCTC
CAAAAGAAAGATGAGTTCCCTCCTGTCATAAAGAGCTGGAACATCATTCTTAATGGTTGG
TGTGTCAAGGGAAGCTTGGCAGACGCTAAAAGGGTTTGGAATGAGATAATTGCGTCTAAG
CTTAAGCCTGACCTGTTCACCTATGGTACATTCATAAATTCGCTTACAAAATCTGGCAAA
CTTAGTACTGCAGTAAAACTATTTACAAGCATGTGGGAGAAAGGGATCAATCCTGATGTG
GCAATTTGTAATTGTATCATCGATCAATTGTGCTTCAAGAAAAGGATTCCAGAAGCACTT
GAGATTTTTGGTGAGATGAATGATCGTGGTTGTCAGGCCGATGTTGCTACCTACAACACT
TTGATAAAACACTTCTGTAAGATTAATCGGATGGAGAAAGTCTATGAGCTTTTGGATGAC
ATGGAGGTTAAGGGCGTCTCTCCAAACAATATGACATACTCCTACATTCTGAAGACGACA
GAGAAACCCAAAGATGTTATTTCATTGATGCAGAGAATGGAGAAGTCTGGTTGCAGACTG
GACTCTGATACATATAACTTAATATTGAACCTTTATGTCAGTTGGGATTATGAGAAAGGG
GTTCAGCTAGTATGGGATGAAATGGAGAGGAATGGATCAGGCCCGGATCAACGATCATTT
ACTATAATGGTTCATGGACTCCATTCCCACGATAAACTGGATGAGGCTTTGCATTATTAT
AGAACGATGGAGTCGAGAGGGATGACACCAGAACCAAGGACGAAGCTATTGGTAAAAGCA
ATACGTATGAAGAAAGATGAACCTGCTACAGAAGAACCTCTTACCAGGAAGAATCTAAAA
TTGGATCCAATTTCAAGACTATTCCATGTTCGTAAATAGTTCATCAATAGATTATACTCC
AGTTGGGGGCTTAGGTTTATGGGCTGACCAAATCTAGCCTAAGAATGTCCAGCTAGCCCA
GGTTTATGCAGCTGTGAAGATGTCAATTTGTTGGATATTCTAGGAGTTTCATGGCTGAAT
GTGAGGCATTGAGTAGGGTGTGCCGCTGTTACTTAATAAAGATAGTCACTTTTTGCTCAA
GCATTGACTTCCAAGGTCAATGATTCAACAGCACTGGCCTAGCAGTCTTAAGTATATGCC
TCATGGTAAATTGGGTAATTGCATCAGAAATGTGTCAAGACTCCAGGCAATACCCTCTGT
CTAGCTCAGAGACAGGGCATTACTGTTGACGCCACAGATGCACTGGAGTATCTTTACCAC
CACTGTCAGCTACCAATCATCCACTGTGATCTGAAGCCAAGCAACATTATTGTTCAGTGG
ACATGAGCACACATGTTGGGGATTCAGCGTGTCAAAAATTCTTTCTGAAAATACAAGCAA
AACTTTGCAATCAGTTCAATTGGAATTAGATGTTCCATCAGTTATGTTGATCCAAGTAAC
AGAGATCCATGCGTTGGTCTCATTATTTTTAGATCTTTCTTGATACATGGATGTGGTATC
CTGACATACTCCCCCCTTTTCTTGTCACCTTGTTTGCATCAGGTTTTATAGTCAAACTGG
TAAACCTCAAAATTGAAGGG