Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0150800-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:2742507:2747439:1 gene:Os01g0150800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein-tyrosine phosphatase-like, PTPLA domain containing protein. (Os01t0150800-01)
Sequence

ATGCCCGAAGAAGCTGCTGGGATGGCGTCAGTCTTGCGGAGGCTCTACCTCTCTGTCTAC
AACTGGATTGTCTTCATCGGATGGGTTCAGGTGTCGTGGTCCATGATATTGGCATTGTTG
GAGAAGAGATATGAGGCCGTCTACGCTGCTGTAGAGCAGCATCTGCTGTTCGCGCAGACT
GCTGCCATCATGGAGATTCTTCATTCCATTGTAGGGTTGGTGAGGTCTCCAGTGTCTTCT
ACTCTTCCACAAATTACTGCAAGGTTGTTCATGATCTGGGGCATCTTGCGGAGCTTCCCT
GAGATACACACTCATATTTTTGTTACCTCCTTGCTCATAAGCTGGTGCATCACTGAGGTT
ACCAGATATTCTTTCAATGGCATGAAGGAGTCATTTGGATTTACACCTTCCTGGCTCTTA
TGGCTTAGGTACAGCACCTTCATAGTATGCTTTCCTATTGGTATGGTTAGTGAGGTTGGC
CTAGTCTACATTGTTGTTCCTTTCATGAAGGCATCTGAGAAATACTGCCTTAGGATGCCC
AACAAATGGAATTTCTCCATCAAATACTTCTATGCCTCTGTCTTTTTCATGGCTTTGTAT
GCCCCAGTATACCCGCACTTGTTCCACTATTTGATCGTCCAGCGGAAGAAGGCCTTGGCA
AAATCAAAAACCACATAA

Peptide Sequence

PEP ID

Os01t0150800-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:2742507:2747439:1 gene:Os01g0150800 transcript:Os01t0150800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein-tyrosine phosphatase-like, PTPLA domain containing protein. (Os01t0150800-01)
Sequence

MPEEAAGMASVLRRLYLSVYNWIVFIGWVQVSWSMILALLEKRYEAVYAAVEQHLLFAQT
AAIMEILHSIVGLVRSPVSSTLPQITARLFMIWGILRSFPEIHTHIFVTSLLISWCITEV
TRYSFNGMKESFGFTPSWLLWLRYSTFIVCFPIGMVSEVGLVYIVVPFMKASEKYCLRMP
NKWNFSIKYFYASVFFMALYAPVYPHLFHYLIVQRKKALAKSKTT

Transcript Sequence

Transcript ID

Os01t0150800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:2742507:2747439:1 gene:Os01g0150800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein-tyrosine phosphatase-like, PTPLA domain containing protein. (Os01t0150800-01)
Sequence

AAAGGAACTTCTTTTCTGAAGACTGATTAAAAAAACATGACCTTTGAATCAAGCTTGTGG
CCTCTCAGATAACGAACTTTTCCTGCCACCTAGTTATGAGTATAATATGGCTTACATTTA
CACAGGTGAAAATGAAAATGAGAAAAGAAAAGGCACAATAAGAAACAACGGCTGATGATT
TATTATGTTCTGCCCTTCTTTGTTGTGACAAAGTATCTTGATCACAAGGACGGAATTGGC
AGGGTAGCTGGCAGTTGCAGTAGCATTAACTGCCAACTGTGTGCTGCTAATCTTATTTGA
TCCAAATTATATGGTTATTAATCAAATCCCATAGCCCCATAATCCCCAACCATGCCCGAA
GAAGCTGCTGGGATGGCGTCAGTCTTGCGGAGGCTCTACCTCTCTGTCTACAACTGGATT
GTCTTCATCGGATGGGTTCAGGTGTCGTGGTCCATGATATTGGCATTGTTGGAGAAGAGA
TATGAGGCCGTCTACGCTGCTGTAGAGCAGCATCTGCTGTTCGCGCAGACTGCTGCCATC
ATGGAGATTCTTCATTCCATTGTAGGGTTGGTGAGGTCTCCAGTGTCTTCTACTCTTCCA
CAAATTACTGCAAGGTTGTTCATGATCTGGGGCATCTTGCGGAGCTTCCCTGAGATACAC
ACTCATATTTTTGTTACCTCCTTGCTCATAAGCTGGTGCATCACTGAGGTTACCAGATAT
TCTTTCAATGGCATGAAGGAGTCATTTGGATTTACACCTTCCTGGCTCTTATGGCTTAGG
TACAGCACCTTCATAGTATGCTTTCCTATTGGTATGGTTAGTGAGGTTGGCCTAGTCTAC
ATTGTTGTTCCTTTCATGAAGGCATCTGAGAAATACTGCCTTAGGATGCCCAACAAATGG
AATTTCTCCATCAAATACTTCTATGCCTCTGTCTTTTTCATGGCTTTGTATGCCCCAGTA
TACCCGCACTTGTTCCACTATTTGATCGTCCAGCGGAAGAAGGCCTTGGCAAAATCAAAA
ACCACATAACTACTCAAGAGCTATCTAATCTGGTTTCTGCTCGCAGCTACAGCTCAGGTT
GCTACCACTTCTTGAACAAAGAAGTAAAAATGTATTAGAATGGAAATGCCGAACTACACA
GACTATCTTTTCCCTTGGTAAATAAAAATGGACATGAGTACTATTTTCATGATTTGTTAA
TGGTGTGTTGTACCAAACTTTGGCTTTTCCATATGTAAATAAAATTGCACTCCATATCGA
TGCC