Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0148500-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:2641000:2644665:-1 gene:Os01g0148500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1677, Oryza sativa family protein. (Os01t0148500-01)
Sequence

ATGGATCAGATGGCGGAGCGGCAGCACAAGAAGCGGAAGCCGGAGAAGATGGCCGGCGCG
CGCACCAGCGGCCATGATAAGGAGGAGGAGAAGAAGGTGAAGGCTCCTTCTGTGTACCTG
GTGGTAGGCCATGAGGTGAGCTGGGCAACCTACTCCGTGTTCAAGGTGGATCCCTACGCG
GCGGCGAAGAGAGGCGGCGGCGGCGGCGACGAGGAGGATCCCGCTCCGGTGCCTATCCCT
CGCCGGCTCGCCCGCATCAGCGCCAAGTTCTGCATGTCTTTCGCCCCCGTGCCCGTGCGC
TCATGGATCGTCGGCGTCGGGGGCGATTCAGCGGATGAGGACTACGCCCCGGAGACCATC
GTCTTCGACACCGAGACTCGCGCCGTGATCCGGGGGCCCAACCTCCTGTCGACCAAGCTC
CACCCGGTTGTGCTCACCATCGGCCACAAGATCTACGCCCTGGCACGGTATCCCTCCGTC
ACGGGGCAACTCGACTTCGTTCCATGGTTCGAGGTGCTTGATCTCTCCCAAGCGCGCGTG
GTCGATGGCCATCTAGAGAGCTGCGAGTGGAAGCCCCTGCCACGGCCTCCCTTCTTCCCA
TGGGACCTCACCCCATTGCAGTACCTTTCTCCGCCAATGGTTACTGTCGAGTCCTACGTT
GCACTGGCCTCCTGCATTCTGGTGTCATTATCTCAGCAGGAGGGCACGCACATGTTTGAT
GTCGACAAGGAGCAATGGTCGAAACTGGATGACAACAGCCTGCCATTCGTCAGAGGCGCC
GTTCCACACGGACCCATCTTCCTTGGCTTATCGAGAGCCAAGAAAATCATCACCGCATAC
AATATCACAGTGGTCTGCCAACCAAGGTCAGGCGGCACAGCGCCGTCCTTATCAATTGTT
GAGTTCCCTGTGGTGTCTGACATGGAAGAGGAGATCTTAAGCACACCAATATTTCTTTCT
CTCGGTAGCCCTGGCTTCTGTTCTTTGAAAAGTTGGAGCGACCACCCAACGACGGATGAT
CCATGTACTCGTGCACGTATCAAATTGATGGCATACCATACAGAGGAACCCATATCACAA
GAGTACATCGAGTCTTCTCATGGCTTATTGATACCGAACCAGTGGAAACAGGTGTACGAG
ATATGTGATTCGTCCAGGGAATTGATTTGGCAATGCCTGATCACTGCAATGTCCTTATGA

Peptide Sequence

PEP ID

Os01t0148500-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:2641000:2644665:-1 gene:Os01g0148500 transcript:Os01t0148500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1677, Oryza sativa family protein. (Os01t0148500-01)
Sequence

MDQMAERQHKKRKPEKMAGARTSGHDKEEEKKVKAPSVYLVVGHEVSWATYSVFKVDPYA
AAKRGGGGGDEEDPAPVPIPRRLARISAKFCMSFAPVPVRSWIVGVGGDSADEDYAPETI
VFDTETRAVIRGPNLLSTKLHPVVLTIGHKIYALARYPSVTGQLDFVPWFEVLDLSQARV
VDGHLESCEWKPLPRPPFFPWDLTPLQYLSPPMVTVESYVALASCILVSLSQQEGTHMFD
VDKEQWSKLDDNSLPFVRGAVPHGPIFLGLSRAKKIITAYNITVVCQPRSGGTAPSLSIV
EFPVVSDMEEEILSTPIFLSLGSPGFCSLKSWSDHPTTDDPCTRARIKLMAYHTEEPISQ
EYIESSHGLLIPNQWKQVYEICDSSRELIWQCLITAMSL

Transcript Sequence

Transcript ID

Os01t0148500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:2641000:2644665:-1 gene:Os01g0148500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein of unknown function DUF1677, Oryza sativa family protein. (Os01t0148500-01)
Sequence

AAACCCTAATTTCTCTTCTCAAAAAAAAAAAAAAAATCCAGCGGCGGCGGCGGCGCACAT
GGATCAGATGGCGGAGCGGCAGCACAAGAAGCGGAAGCCGGAGAAGATGGCCGGCGCGCG
CACCAGCGGCCATGATAAGGAGGAGGAGAAGAAGGTGAAGGCTCCTTCTGTGTACCTGGT
GGTAGGCCATGAGGTGAGCTGGGCAACCTACTCCGTGTTCAAGGTGGATCCCTACGCGGC
GGCGAAGAGAGGCGGCGGCGGCGGCGACGAGGAGGATCCCGCTCCGGTGCCTATCCCTCG
CCGGCTCGCCCGCATCAGCGCCAAGTTCTGCATGTCTTTCGCCCCCGTGCCCGTGCGCTC
ATGGATCGTCGGCGTCGGGGGCGATTCAGCGGATGAGGACTACGCCCCGGAGACCATCGT
CTTCGACACCGAGACTCGCGCCGTGATCCGGGGGCCCAACCTCCTGTCGACCAAGCTCCA
CCCGGTTGTGCTCACCATCGGCCACAAGATCTACGCCCTGGCACGGTATCCCTCCGTCAC
GGGGCAACTCGACTTCGTTCCATGGTTCGAGGTGCTTGATCTCTCCCAAGCGCGCGTGGT
CGATGGCCATCTAGAGAGCTGCGAGTGGAAGCCCCTGCCACGGCCTCCCTTCTTCCCATG
GGACCTCACCCCATTGCAGTACCTTTCTCCGCCAATGGTTACTGTCGAGTCCTACGTTGC
ACTGGCCTCCTGCATTCTGGTGTCATTATCTCAGCAGGAGGGCACGCACATGTTTGATGT
CGACAAGGAGCAATGGTCGAAACTGGATGACAACAGCCTGCCATTCGTCAGAGGCGCCGT
TCCACACGGACCCATCTTCCTTGGCTTATCGAGAGCCAAGAAAATCATCACCGCATACAA
TATCACAGTGGTCTGCCAACCAAGGTCAGGCGGCACAGCGCCGTCCTTATCAATTGTTGA
GTTCCCTGTGGTGTCTGACATGGAAGAGGAGATCTTAAGCACACCAATATTTCTTTCTCT
CGGTAGCCCTGGCTTCTGTTCTTTGAAAAGTTGGAGCGACCACCCAACGACGGATGATCC
ATGTACTCGTGCACGTATCAAATTGATGGCATACCATACAGAGGAACCCATATCACAAGA
GTACATCGAGTCTTCTCATGGCTTATTGATACCGAACCAGTGGAAACAGGTGTACGAGAT
ATGTGATTCGTCCAGGGAATTGATTTGGCAATGCCTGATCACTGCAATGTCCTTATGAGT
ATATTCCATGATGTTGGAGCCACCAGAAGTTTATTGTAGAGGCTGGCTTAAGAAAACGGT
TTACTTGTAGCACCCTACAATTCCAGTAAATTCTTCAGAGTACAACAGCTTTGCATGGCT
TCGAACTTAGGGAGTAGTGCTGCAGGGCATCTTTTGCTTGTGTATTAAGTGGATTTAGAA
TATGATATTTGAGGAGAAATGATCCCCTGTAGTATCTATGCTGGACTGATCTAATTGAAC
CTGTCTAAAAGAGTTTCATGTATGAAACAGCTGTACGTAT