Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0147900-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:2589835:2593568:-1 gene:Os01g0147900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TRIOSEPHOSPHATE ISOMERASE description:Triosephosphate isomerase, cytosolic (EC 5.3.1.1) (TIM) (Triose- phosphate isomerase). (Os01t0147900-01)
Sequence	ATGGGCCGCAAGTTCTTCGTTGGTGGCAACTGGAAATGCAACGGGACCACTGATCAGGTG GACAAAATTGTGAAAATTCTGAATGAGGGACAGATTGCTTCTACAGATGTTGTTGAGGTG GTTGTCAGCCCACCTTATGTGTTCCTTCCCGTGGTCAAGAGTCAGCTGCGCCCGGAGATC CAAGTTGCTGCTCAGAATTGTTGGGTGAAGAAGGGCGGGGCTTTCACCGGTGAGGTCAGC GCTGAGATGCTTGTCAACCTTAGTATTCCCTGGGTTATTCTTGGACACTCTGAAAGGAGG AGTTTGTTGGGTGAATCAAATGAGTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAG GGCTTGAAGGTCATTGCATGTGTTGGTGAGACTCTCGAGCAGCGGGAATCTGGTTCGACC ATGGATGTTGTTGCTGCACAAACAAAAGCAATTTCTGAAAGGATCAAGGATTGGACTAAT GTGGTTGTTGCCTATGAACCTGTGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGAT CAAGCACAAGAAGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAG GTTGCTGAATCAACAAGGATCATCTATGGAGGTTCCGTAACTGGTGCGAACTGCAAGGAG CTGGCAGCAAAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGCCTGAA TTCATCGACATCATCAACTCCGCCACCGTGAAGTCCGCCTAA

Peptide Sequence

PEP ID	Os01t0147900-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:2589835:2593568:-1 gene:Os01g0147900 transcript:Os01t0147900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TRIOSEPHOSPHATE ISOMERASE description:Triosephosphate isomerase, cytosolic (EC 5.3.1.1) (TIM) (Triose- phosphate isomerase). (Os01t0147900-01)
Sequence	MGRKFFVGGNWKCNGTTDQVDKIVKILNEGQIASTDVVEVVVSPPYVFLPVVKSQLRPEI QVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYALSQ GLKVIACVGETLEQRESGSTMDVVAAQTKAISERIKDWTNVVVAYEPVWAIGTGKVATPD QAQEVHDGLRKWLAANVSAEVAESTRIIYGGSVTGANCKELAAKPDVDGFLVGGASLKPE FIDIINSATVKSA

Transcript Sequence

Transcript ID	Os01t0147900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:2589835:2593568:-1 gene:Os01g0147900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TRIOSEPHOSPHATE ISOMERASE description:Triosephosphate isomerase, cytosolic (EC 5.3.1.1) (TIM) (Triose- phosphate isomerase). (Os01t0147900-01)
Sequence	CCCCCCCCCCCCCCCCCGCGTCCAGTTCCATCTAATCAGCTTCTCGTCGAGATGGGCCGC AAGTTCTTCGTTGGTGGCAACTGGAAATGCAACGGGACCACTGATCAGGTGGACAAAATT GTGAAAATTCTGAATGAGGGACAGATTGCTTCTACAGATGTTGTTGAGGTGGTTGTCAGC CCACCTTATGTGTTCCTTCCCGTGGTCAAGAGTCAGCTGCGCCCGGAGATCCAAGTTGCT GCTCAGAATTGTTGGGTGAAGAAGGGCGGGGCTTTCACCGGTGAGGTCAGCGCTGAGATG CTTGTCAACCTTAGTATTCCCTGGGTTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTG GGTGAATCAAATGAGTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAG GTCATTGCATGTGTTGGTGAGACTCTCGAGCAGCGGGAATCTGGTTCGACCATGGATGTT GTTGCTGCACAAACAAAAGCAATTTCTGAAAGGATCAAGGATTGGACTAATGTGGTTGTT GCCTATGAACCTGTGTGGGCCATTGGAACTGGTAAAGTTGCTACACCAGATCAAGCACAA GAAGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTTGCTGAA TCAACAAGGATCATCTATGGAGGTTCCGTAACTGGTGCGAACTGCAAGGAGCTGGCAGCA AAGCCTGATGTTGATGGTTTTCTCGTCGGTGGTGCTTCATTGAAGCCTGAATTCATCGAC ATCATCAACTCCGCCACCGTGAAGTCCGCCTAAGATCTTCACCCCATTCACCTTCGGCGT GGGAAGATGTCTGAAGAGGATCATACCTTTTTCTGTGCTTATGTAATGCTAGTAGTTTTG TGCTGGAGCAGCTACTCTTTTTCCTCCCCTTCACTTCCCTGAAGCTACCTGCAGCTTGAG CAATGCTAATAATGCACACCACTGAACATACTACCATACCAATAATGTTTAGCTCCTTTT GTCGTGAGTTATTATCATGTGAGTTTCAGATC