Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0144340-00
CDS Infomation

cds chromosome:IRGSP-1.0:1:2391464:2397295:-1 gene:Os01g0144340 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Actin-related protein 5. (Os01t0144340-00)
Sequence

ATGCCGTCGGGGTACCGCCCGGACCGGGAGACCGACTTCGCCGGCTTCCCGAGCACCACC
CCCATCGTCATCGACAACGGCGCCTCCACCTTCCGCATCGGGTGGGCCGGCGAGGCGGAG
CCCCGCGTCGCCTTCCGCAACATCGTGCAGCGGCCGCGCCACCGCAGCTCTGGTGAAACT
GTCACAGTTGTTGGGGACACTGATCCAGCTTTGATGAAGTATTTCGATTGCACACGATCA
GCAATTCGCTCACCATTTGATGATGATGTTGTCTACCAGTTCGAGTACATGGAATATATT
CTTGACTTTGGTTTTGATCGACTAGGTGCCACTTCAGAGGTGGGCCATCCCATTCTTATG
ACAGAGTGTGAATGCAATCCATCCTTTTCTCGAGCCAGAATGTCAGAACTACTTTTTGAG
ACATATGGCGTGCCATCCATTGCTTTTGGCATTGACGATGTGTTTAGTTACAAGTACAAT
CAGAAACTTGGGAATTGTGGAGAAGATGGACTGGCCATTTCGTGTGAACATGGAACATGC
CATGTTGTTCCATTTTTAAAGGGAGAACCTGTGTTGGGGGCATGCTGCAGAACCAACGTT
GGTGGCTTTCACATCACAGATTTTCTGAGGCAGCTCCTCTCTCTAAAGTATCCCTATCAC
AGTGCAAGCATTACATGGGAAAAGGCTGAAGAGCTGAAGAAGGAACATTGTTACGTAGCT
CTTGATTATATGTCAGAGTTGCAGATATTTAAGAACAATAAGGAAGAAGCTGAAGAAAAA
ACTAGGTATTGGCAGCTACCATGGGTCCCGCCTCCTGTAGAAGAACCACCATCTGAGGAA
GAACTTGCAAGAAAAGCAGCTTTGAAGGAAAAGGCTGGTCAACGTTTGCGAGATATGGCT
GCTGCAAAAAGGTCGCAGAAGATAGCAGAACTTGAAAAACAGCTTTCTTATTTGGAGGAA
CTAATGGAGCAACTTGATGGAGCTGAGGAAGAAGAAGCAACAGCCATTTTAGGTAGATCT
GGGTATCTTTCCCAGCAGGAAATCAAATCTGCTATTTTGAAAGCAACACAATCCTTAAGG
AAGGCAAAGGGGGAGTCCAATGGTAACGAAGAGAAAGCAGATGCTTCTGGGGTTGATAAG
TATCCACTTGTGTCTGTCCCTGATGAAACATTGACACCAGAACAGTTAAAAGAGAAGAAG
AAACAGATACTACTTAAAACCACAACAGAAGGTCGAATGCGTGCCAAGCAGAGACGTGCT
GAGGAGGAAGCATTGAGGGAGAAGCAAGAAGAAGAGAGGCGTTTGGAGAACCCAGAGTTA
TACCTTGAAGAGCTCCGTGCTCGATACTCGGAACTTTCTGATAGGGTTGATCAGAGGAAG
CGACAGAAACTCAATGGTGGTAAGACCAATGGTAATCATAATTCATCTGGTGGAGTAGGC
CGTGGGGAACGTCTTAATGCCGCCCAGAAAGAAAGGATGCGGTTGCTCACATCTGCTGCA
TTTGATCGGGGGAAGGGCGAGGACACTTTTGGTACGAGAGATGAAGATTGGTTAGTCTAC
AAAAAGATGAGCAAAGATAATGACGACGACGACGATGGGAACGATGATGATGAATCAGAA
CTTGCTCGAATTGCTTCTAAGATCCAGGATATGGACCCTACATTTGTGAACAAAGCTGAA
GCTGTCCAACAGACTCCTGAGCCTCCTAAGGTCCGGACTCTTACAGCAGAAGATTACAGG
ATTTCCATAGGGATCGAGCGGTTCCGGTGCCCTGAAATATTGTTCCAGCCTGGTATGATA
GGAATTGACCAGGCTGGTATCGATGAGATGGTCAGCATCTCACTTAGGCGACTAATGGAA
GACGAGGCTGTCAAGGAGCGCCTTTGCCAGTCCATCCTTGTCACTGGAGGCTGTTCTTTG
ATCCCAGGCATGATCCCTCGGCTGGAATCCGGAATCCGGCAGTTTCGGCCCTACCTCTCA
CCCCTGAAGCTTGTTAGAGCAGCCGACCCCCTTATAGATGCATGGAGGGGCGCTGCTGCC
TTTGCAGCTTCCAGCAAGTTTGGGAGGCACACCTTCAGCTTAGCAGATTACAGAGAGCAT
GGAGAAAACTTGTTTCATCGGTACAACATTGTTTACTCCTTGTAG

Peptide Sequence

PEP ID

Os01t0144340-00
PEP Infomation

pep chromosome:IRGSP-1.0:1:2391464:2397295:-1 gene:Os01g0144340 transcript:Os01t0144340-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Actin-related protein 5. (Os01t0144340-00)
Sequence

MPSGYRPDRETDFAGFPSTTPIVIDNGASTFRIGWAGEAEPRVAFRNIVQRPRHRSSGET
VTVVGDTDPALMKYFDCTRSAIRSPFDDDVVYQFEYMEYILDFGFDRLGATSEVGHPILM
TECECNPSFSRARMSELLFETYGVPSIAFGIDDVFSYKYNQKLGNCGEDGLAISCEHGTC
HVVPFLKGEPVLGACCRTNVGGFHITDFLRQLLSLKYPYHSASITWEKAEELKKEHCYVA
LDYMSELQIFKNNKEEAEEKTRYWQLPWVPPPVEEPPSEEELARKAALKEKAGQRLRDMA
AAKRSQKIAELEKQLSYLEELMEQLDGAEEEEATAILGRSGYLSQQEIKSAILKATQSLR
KAKGESNGNEEKADASGVDKYPLVSVPDETLTPEQLKEKKKQILLKTTTEGRMRAKQRRA
EEEALREKQEEERRLENPELYLEELRARYSELSDRVDQRKRQKLNGGKTNGNHNSSGGVG
RGERLNAAQKERMRLLTSAAFDRGKGEDTFGTRDEDWLVYKKMSKDNDDDDDGNDDDESE
LARIASKIQDMDPTFVNKAEAVQQTPEPPKVRTLTAEDYRISIGIERFRCPEILFQPGMI
GIDQAGIDEMVSISLRRLMEDEAVKERLCQSILVTGGCSLIPGMIPRLESGIRQFRPYLS
PLKLVRAADPLIDAWRGAAAFAASSKFGRHTFSLADYREHGENLFHRYNIVYSL

Transcript Sequence

Transcript ID

Os01t0144340-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:2391464:2397295:-1 gene:Os01g0144340 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Actin-related protein 5. (Os01t0144340-00)
Sequence

TCCTCTTCTCCCCTCCCCCTCTCAAAGCACCGCGAGCTCGCGACGAGGACGACGCAGCGA
GACGAGACGACAAAATTTACCAAAGTGCCCCTCAAACCCCTCACCCCCTCCGCCTCCGCC
TCCGGCGAGCCCGTCGCCGCCGGCCGGCATGCCGTCGGGGTACCGCCCGGACCGGGAGAC
CGACTTCGCCGGCTTCCCGAGCACCACCCCCATCGTCATCGACAACGGCGCCTCCACCTT
CCGCATCGGGTGGGCCGGCGAGGCGGAGCCCCGCGTCGCCTTCCGCAACATCGTGCAGCG
GCCGCGCCACCGCAGCTCTGGTGAAACTGTCACAGTTGTTGGGGACACTGATCCAGCTTT
GATGAAGTATTTCGATTGCACACGATCAGCAATTCGCTCACCATTTGATGATGATGTTGT
CTACCAGTTCGAGTACATGGAATATATTCTTGACTTTGGTTTTGATCGACTAGGTGCCAC
TTCAGAGGTGGGCCATCCCATTCTTATGACAGAGTGTGAATGCAATCCATCCTTTTCTCG
AGCCAGAATGTCAGAACTACTTTTTGAGACATATGGCGTGCCATCCATTGCTTTTGGCAT
TGACGATGTGTTTAGTTACAAGTACAATCAGAAACTTGGGAATTGTGGAGAAGATGGACT
GGCCATTTCGTGTGAACATGGAACATGCCATGTTGTTCCATTTTTAAAGGGAGAACCTGT
GTTGGGGGCATGCTGCAGAACCAACGTTGGTGGCTTTCACATCACAGATTTTCTGAGGCA
GCTCCTCTCTCTAAAGTATCCCTATCACAGTGCAAGCATTACATGGGAAAAGGCTGAAGA
GCTGAAGAAGGAACATTGTTACGTAGCTCTTGATTATATGTCAGAGTTGCAGATATTTAA
GAACAATAAGGAAGAAGCTGAAGAAAAAACTAGGTATTGGCAGCTACCATGGGTCCCGCC
TCCTGTAGAAGAACCACCATCTGAGGAAGAACTTGCAAGAAAAGCAGCTTTGAAGGAAAA
GGCTGGTCAACGTTTGCGAGATATGGCTGCTGCAAAAAGGTCGCAGAAGATAGCAGAACT
TGAAAAACAGCTTTCTTATTTGGAGGAACTAATGGAGCAACTTGATGGAGCTGAGGAAGA
AGAAGCAACAGCCATTTTAGGTAGATCTGGGTATCTTTCCCAGCAGGAAATCAAATCTGC
TATTTTGAAAGCAACACAATCCTTAAGGAAGGCAAAGGGGGAGTCCAATGGTAACGAAGA
GAAAGCAGATGCTTCTGGGGTTGATAAGTATCCACTTGTGTCTGTCCCTGATGAAACATT
GACACCAGAACAGTTAAAAGAGAAGAAGAAACAGATACTACTTAAAACCACAACAGAAGG
TCGAATGCGTGCCAAGCAGAGACGTGCTGAGGAGGAAGCATTGAGGGAGAAGCAAGAAGA
AGAGAGGCGTTTGGAGAACCCAGAGTTATACCTTGAAGAGCTCCGTGCTCGATACTCGGA
ACTTTCTGATAGGGTTGATCAGAGGAAGCGACAGAAACTCAATGGTGGTAAGACCAATGG
TAATCATAATTCATCTGGTGGAGTAGGCCGTGGGGAACGTCTTAATGCCGCCCAGAAAGA
AAGGATGCGGTTGCTCACATCTGCTGCATTTGATCGGGGGAAGGGCGAGGACACTTTTGG
TACGAGAGATGAAGATTGGTTAGTCTACAAAAAGATGAGCAAAGATAATGACGACGACGA
CGATGGGAACGATGATGATGAATCAGAACTTGCTCGAATTGCTTCTAAGATCCAGGATAT
GGACCCTACATTTGTGAACAAAGCTGAAGCTGTCCAACAGACTCCTGAGCCTCCTAAGGT
CCGGACTCTTACAGCAGAAGATTACAGGATTTCCATAGGGATCGAGCGGTTCCGGTGCCC
TGAAATATTGTTCCAGCCTGGTATGATAGGAATTGACCAGGCTGGTATCGATGAGATGGT
CAGCATCTCACTTAGGCGACTAATGGAAGACGAGGCTGTCAAGGAGCGCCTTTGCCAGTC
CATCCTTGTCACTGGAGGCTGTTCTTTGATCCCAGGCATGATCCCTCGGCTGGAATCCGG
AATCCGGCAGTTTCGGCCCTACCTCTCACCCCTGAAGCTTGTTAGAGCAGCCGACCCCCT
TATAGATGCATGGAGGGGCGCTGCTGCCTTTGCAGCTTCCAGCAAGTTTGGGAGGCACAC
CTTCAGCTTAGCAGATTACAGAGAGCATGGAGAAAACTTGTTTCATCGGTACAACATTGT
TTACTCCTTGTAGTATCTTT