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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0142100-02
CDS Infomation

cds chromosome:IRGSP-1.0:1:2266353:2268842:-1 gene:Os01g0142100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:EGY2 description:Peptidase M50 family protein. (Os01t0142100-01);Similar to Metalloendopeptidase. (Os01t0142100-02)
Sequence

AGGCAAACATTGCAGCCTGAAACTACAGCTGTCCCAGAGTGGTTTGCTGCTGCTTCATTT
GGAGTAGTTACCATCTTCACCCTTTTGCTCCGAAATGTACCTTTGCTACAGGACAACTTG
CTATCAACATTTGATAACCTTGAGCTATTAAAAGATGGAGTTTATGGCGCCCTAGTAACT
GCGGCCATAATAGGCGTTCATGAGATTGCACATATCCTTGCTGCTAGGGATACTGGAATC
AAGCTTGCCGTACCATATTTTGTTCCTAGCTGGCAGATAGGATCTTTTGGTGCTATTACC
AGAATTGTCAATATAGTCCGCAATCGTGAGGACCTACTGAAGGTAGCAGCTGCTGGACCA
TTGGCAGGGTTCTCCCTTGGATTTGTTCTTTTGCTGCTAGGCTTCATCTTACCTCCAAGT
GATGGCCTTGGCCTTGTGATAGATCCAGCAGTATTTCATGAATCATTTCTTGTTGGTGGT
CTTGCAAAGCTTATTCTTGGAGATGCTCTAAAAGAAGGAACAAAACTATCCATAAATCCA
CTGGTCTTATGGGCCTGGGCTGGTCTCCTGATCAATGCCATCAATAGCATCCCTGCAGGA
GAGCTTGATGGCGGCCGCATAGCATTTGCCATGTGGGGAAGAAAGATATCGTCTCGAATC
AGCAGCTTGGCCATTGGACTTCTTGGAATTTCAGCTCTCTTCAACGACGTCGCGTTCTAC
TGGGTGGTGCTGATCTTCTTCTTGCAGAGAGGACCGATTTCCCCTCTCTCTGAAGAAATA
ACAGAACCTGAGAACAATTACATCAGCATTGGTGTAGCCATCTTGCTCTTTGGACTTCTT
GTCTGCCTACCCTACCCATTCCCCTTTGATCCATCACAACTAACTGATTTTGACTTGTGA

Peptide Sequence

PEP ID

Os01t0142100-02
PEP Infomation

pep chromosome:IRGSP-1.0:1:2266353:2268842:-1 gene:Os01g0142100 transcript:Os01t0142100-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:EGY2 description:Peptidase M50 family protein. (Os01t0142100-01);Similar to Metalloendopeptidase. (Os01t0142100-02)
Sequence

RQTLQPETTAVPEWFAAASFGVVTIFTLLLRNVPLLQDNLLSTFDNLELLKDGVYGALVT
AAIIGVHEIAHILAARDTGIKLAVPYFVPSWQIGSFGAITRIVNIVRNREDLLKVAAAGP
LAGFSLGFVLLLLGFILPPSDGLGLVIDPAVFHESFLVGGLAKLILGDALKEGTKLSINP
LVLWAWAGLLINAINSIPAGELDGGRIAFAMWGRKISSRISSLAIGLLGISALFNDVAFY
WVVLIFFLQRGPISPLSEEITEPENNYISIGVAILLFGLLVCLPYPFPFDPSQLTDFDL

Transcript Sequence

Transcript ID

Os01t0142100-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:2266353:2268842:-1 gene:Os01g0142100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:EGY2 description:Peptidase M50 family protein. (Os01t0142100-01);Similar to Metalloendopeptidase. (Os01t0142100-02)
Sequence

TAGGCAAACATTGCAGCCTGAAACTACAGCTGTCCCAGAGTGGTTTGCTGCTGCTTCATT
TGGAGTAGTTACCATCTTCACCCTTTTGCTCCGAAATGTACCTTTGCTACAGGACAACTT
GCTATCAACATTTGATAACCTTGAGCTATTAAAAGATGGAGTTTATGGCGCCCTAGTAAC
TGCGGCCATAATAGGCGTTCATGAGATTGCACATATCCTTGCTGCTAGGGATACTGGAAT
CAAGCTTGCCGTACCATATTTTGTTCCTAGCTGGCAGATAGGATCTTTTGGTGCTATTAC
CAGAATTGTCAATATAGTCCGCAATCGTGAGGACCTACTGAAGGTAGCAGCTGCTGGACC
ATTGGCAGGGTTCTCCCTTGGATTTGTTCTTTTGCTGCTAGGCTTCATCTTACCTCCAAG
TGATGGCCTTGGCCTTGTGATAGATCCAGCAGTATTTCATGAATCATTTCTTGTTGGTGG
TCTTGCAAAGCTTATTCTTGGAGATGCTCTAAAAGAAGGAACAAAACTATCCATAAATCC
ACTGGTCTTATGGGCCTGGGCTGGTCTCCTGATCAATGCCATCAATAGCATCCCTGCAGG
AGAGCTTGATGGCGGCCGCATAGCATTTGCCATGTGGGGAAGAAAGATATCGTCTCGAAT
CAGCAGCTTGGCCATTGGACTTCTTGGAATTTCAGCTCTCTTCAACGACGTCGCGTTCTA
CTGGGTGGTGCTGATCTTCTTCTTGCAGAGAGGACCGATTTCCCCTCTCTCTGAAGAAAT
AACAGAACCTGAGAACAATTACATCAGCATTGGTGTAGCCATCTTGCTCTTTGGACTTCT
TGTCTGCCTACCCTACCCATTCCCCTTTGATCCATCACAACTAACTGATTTTGACTTGTG
AAACAAAATCAGTCACAGGTCACAAGCTTTCTTCCTCCCAAATTTATGTTAGATGCTGAG
ATGTATGTAACCTGTCGGCTCCCTGTTTTATTTATCTTAGCCTTGGTCATAAAGATTTGG
AGTCTATGAGCTCCATTGCTCCTTGCAGTAGCAAAATAAAATGCAGGAGCATTCCTGTGG
TAGTTCAGTTGTTGTAGTAGTATTTTGGTAGGATGCATCAGTGTAGAACAGCATATGAGC
AGTTGAGCACATGATTCTGGATGTAATTTTATCAGTGCAGTAGTTTTTTGCATTAAGG