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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0136000-00
CDS Infomation

cds chromosome:IRGSP-1.0:1:1944276:1944948:-1 gene:Os01g0136000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:16.9 KDA CLASS I HEAT SHOCK PROTEIN 3 description:Similar to Cytosolic class I small heat-shock protein HSP17.5. (Os01t0136000-00)
Sequence

ATGTCGCTCGTGAGGCGCAGCAACGTGTTCGACCCCTTCGCTGACTTCTGGGACCCCTTC
GACGGCGTCTTCCGCTCCCTCGTCCCGGCGACCTCCGACCGCGACACCGCCGCTTTCGCC
AACGCCCGCGTCGACTGGAAGGAGACGCCGGAGTCGCACGTCTTCAAGGCCGACCTCCCC
GGCGTCAAGAAGGAGGAGGTGAAGGTGGAGGTGGAGGAGGGCAACGTGCTGGTGATCAGC
GGGCAGCGCAGCAAGGAGAAGGAGGACAAGAACGACAAGTGGCACCGCGTGGAGCGCAGC
AGCGGGCAGTTCATGCGGCGGTTCAGGCTGCCGGAGAACGCCAAGGTGGACCAGGTGAAG
GCCAGCATGGAGAACGGCGTGCTCACCGTCACCGTGCCCAAGGCTGAGGTCAAGAAGCCC
GAGGTGAAGGCCATTGAGATCTCTGGCTGA

Peptide Sequence

PEP ID

Os01t0136000-00
PEP Infomation

pep chromosome:IRGSP-1.0:1:1944276:1944948:-1 gene:Os01g0136000 transcript:Os01t0136000-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:16.9 KDA CLASS I HEAT SHOCK PROTEIN 3 description:Similar to Cytosolic class I small heat-shock protein HSP17.5. (Os01t0136000-00)
Sequence

MSLVRRSNVFDPFADFWDPFDGVFRSLVPATSDRDTAAFANARVDWKETPESHVFKADLP
GVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVK
ASMENGVLTVTVPKAEVKKPEVKAIEISG

Transcript Sequence

Transcript ID

Os01t0136000-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:1944276:1944948:-1 gene:Os01g0136000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:16.9 KDA CLASS I HEAT SHOCK PROTEIN 3 description:Similar to Cytosolic class I small heat-shock protein HSP17.5. (Os01t0136000-00)
Sequence

AGCTAGCGATCCACGACAAACCAACAATGTCGCTCGTGAGGCGCAGCAACGTGTTCGACC
CCTTCGCTGACTTCTGGGACCCCTTCGACGGCGTCTTCCGCTCCCTCGTCCCGGCGACCT
CCGACCGCGACACCGCCGCTTTCGCCAACGCCCGCGTCGACTGGAAGGAGACGCCGGAGT
CGCACGTCTTCAAGGCCGACCTCCCCGGCGTCAAGAAGGAGGAGGTGAAGGTGGAGGTGG
AGGAGGGCAACGTGCTGGTGATCAGCGGGCAGCGCAGCAAGGAGAAGGAGGACAAGAACG
ACAAGTGGCACCGCGTGGAGCGCAGCAGCGGGCAGTTCATGCGGCGGTTCAGGCTGCCGG
AGAACGCCAAGGTGGACCAGGTGAAGGCCAGCATGGAGAACGGCGTGCTCACCGTCACCG
TGCCCAAGGCTGAGGTCAAGAAGCCCGAGGTGAAGGCCATTGAGATCTCTGGCTGAGAAG
GAGAGAAGCTATATACGTCGTGCTGTGCTCGAGTCCGGTCGTGTCAGGTCCATGTGTGGC
GAGTCTCGTGTCTGTGTGGCAGTTGTGTCGTGGCCTCCGCCAATGTAATGTATTCTGGTT
AGACCGGAGCACAACATTGGTTCGGTCCTTGGAATTGTCCCATGGCGTCTGAATGAATGA
GTAAATAAAGTGT