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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0131800-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:1754374:1757590:1 gene:Os01g0131800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Signal peptidase 22 kDa subunit family protein. (Os01t0131800-01)
Sequence

ATGCACTCTTGGGTGCAGCGGCTGTTGACGACGGCGACGACGGCGGCGCTCCTCCTCCTC
GCCGCCTGCTGCGCCGCCTCCGCGCTCGACGCCTTCCACGTCCCCTCCGTCCAGGCGCAA
GCCCATGTTACAAAGATAAACCGATTCCACAAGCAGCTCAATGGCAACGACAAGGTGACA
CTGACCTTCAACTTGTCCGCAAATTTGGAGTCACTATTCACTTGGAGCACAAAACAGGTG
TTCGTTTTTCTGACTGCTGAGTATGAGAACTCGAAGAATTCGCTTAACCAGGTTTCATTG
TGGGACCACATCATACCCGACAAGGACAAAGCGAATTTGCAAGTGGAGGTGAAGAGCAAG
TATCCTCTGATTGACCAGGGAAGCAGTTTGCGCGGGAAGAAAGTTCAGCTTGTTCTACAC
TGGCATGTCATGCCCAAGGCCGGTGTAATGATCCGGGATCGAATGGCTCTCTCAGAGTTC
AACCTGCCAGACTCCTATACATCTTGA

Peptide Sequence

PEP ID

Os01t0131800-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:1754374:1757590:1 gene:Os01g0131800 transcript:Os01t0131800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Signal peptidase 22 kDa subunit family protein. (Os01t0131800-01)
Sequence

MHSWVQRLLTTATTAALLLLAACCAASALDAFHVPSVQAQAHVTKINRFHKQLNGNDKVT
LTFNLSANLESLFTWSTKQVFVFLTAEYENSKNSLNQVSLWDHIIPDKDKANLQVEVKSK
YPLIDQGSSLRGKKVQLVLHWHVMPKAGVMIRDRMALSEFNLPDSYTS

Transcript Sequence

Transcript ID

Os01t0131800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:1754374:1757590:1 gene:Os01g0131800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Signal peptidase 22 kDa subunit family protein. (Os01t0131800-01)
Sequence

GGAAAAAAAAACTCGGAGCGATGCACTCTTGGGTGCAGCGGCTGTTGACGACGGCGACGA
CGGCGGCGCTCCTCCTCCTCGCCGCCTGCTGCGCCGCCTCCGCGCTCGACGCCTTCCACG
TCCCCTCCGTCCAGGCGCAAGCCCATGTTACAAAGATAAACCGATTCCACAAGCAGCTCA
ATGGCAACGACAAGGTGACACTGACCTTCAACTTGTCCGCAAATTTGGAGTCACTATTCA
CTTGGAGCACAAAACAGGTGTTCGTTTTTCTGACTGCTGAGTATGAGAACTCGAAGAATT
CGCTTAACCAGGTTTCATTGTGGGACCACATCATACCCGACAAGGACAAAGCGAATTTGC
AAGTGGAGGTGAAGAGCAAGTATCCTCTGATTGACCAGGGAAGCAGTTTGCGCGGGAAGA
AAGTTCAGCTTGTTCTACACTGGCATGTCATGCCCAAGGCCGGTGTAATGATCCGGGATC
GAATGGCTCTCTCAGAGTTCAACCTGCCAGACTCCTATACATCTTGAGCAGCTCTGCTCT
ATCTGATCAGTTCTGTAGTAGACTCACACATGTAGATCTGGTAACAATCCTCTAATGAAC
ATGACGATTAAGCATTGTGCATCCTAGGCAAAATGCTCTTTCCAATTTGGCATCTGCCAT
ACGTTAGGATAATTGATGGAAAACCGAAGCAGCATATGAAAAGCACAGAAACAGCGGCTG
CGTTTATTCTTGCCCC