Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0125800-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:1413839:1418982:1 gene:Os01g0125800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Actin-interacting protein 1 description:Actin-interacting, WD40-repeat protein, Actin turnover (Os01t0125800-01)
Sequence	ATGGCGCAGCTGCAGGAGACGTACGCGTGCTCGCCGGCGACGGAGCGCGGCCGCGGGATC CTCCTCGCGGGGGACCCCAAGACGGAGACGATCGCCTACTGCACGGGCCGCAGCGTCATC ATCCGCCGCCTCGACGCGCCGCTCGACTGCTGGGCCTACCCGGACCACGCCTACCCGACC ACCGTCGCCCGCTTCTCCCCCAACGGCGAGTGGGTCGCCTCCGCCGACGCCTCCGGCTGC GTCCGCGTCTGGGGGCGCTACGGCGACCGCGCCCTCAAGGCCGAGTTCCGCCCCCTCTCC GGCCGCGTCGACGACCTCCGCTGGTCCCCCGATGGCCTCCGCATCGTCGTGTCCGGGGAC GGCAAGGGGAAGTCCTTCGTCCGCGCTTTCGTGTGGGACTCTGGCAGCACTGTTGGTGAG TTTGACGGGCACTCAAAGAGAGTTCTGAGCTGTGACTTTAAGCCAACCCGGCCGTTCCGC ATTGTGACATGTGGTGAAGATTTTCTGGCAAACTACTATGAAGGACCACCATTTAAATTC AAGCATTCCATAAGGGATCACTCAAACTTTGTTAACTGTATCCGATATGCTCCTGATGGG AGTAAGTTTATCAGCGTGAGTTCAGATAAGAAGGGTTTGATATATGATGGCAAAACTGGA GACAAGATTGGAGAACTTTCCAGCGAAGGCAGTCACACAGGGAGTATATATGCTGTTAGC TGGAGTCCTGACAGCAAACAAGTTCTGACAGTTTCTGCTGATAAAACTGCCAAAGTCTGG GACATACTAGAAGACGCTAGTGGGAAATTGAACAGAACTTTGGCTTGTCCTGGTACAGGT GGAGTAGATGACATGCTTGTGGGTTGCCTCTGGCAGAATGATTATCTTGTGACAGTCTCT CTTGGTGGGACATTTAATGTGTTCTCTGCAAGTAATCCAGACAAAGAGCCAGTAACCTTT GCAGGACATTTGAAGACTGTTAGTTCTTTGGCCTTTTTCCCACAAAGTAACCCCAAAACT ATACTGTCCACAAGTTACGATGGCGTTATCATGAGATGGATAAAGGGTGTTGGATATGGT GGCAGATTGATGCGAAAGAACAACACCCAGATTAAATGCTTTACTGTAGCAGAAGAGGAA CTCGTCACCTCTGGATATGATAACAAGGTTTTCAGAATTCCTCTTAATGGAGATCAGTGT GGAGATGCTGAATCAGTTGATGTAGGAGGTCAGCCAAATGCTTTGAACCTTGCAATTCAA AAACCTGAATTTGCACTGGTCACAACAGATTCTGGGATAGTATTGCTGCACAAGTCAACG GTCATTTCTACAACCAAAGTTAATTATACTATCACTTCATCTGCTGTTTCTCCTGATGGC ACTGAAGCCATCGTTGGTGCACAAGATGGGAAACTGCGTATCTATTCCATCAATGGGGAT ACAGTTACAGAAGAAGCATTAATTGAGAAGCACCGGGGTGCTATTACTTGCATACATTAT TCGCCCGATGTTTCCATGTTTGCTTCTGCTGATGCCAACAGGGAAGCCGTTGTGTGGGAT CGGGCAACGAGAGAGATCAAGCTGAAGAACATGTTGTTCCACTCAGCTCGGATAAACTGC CTGGCTTGGTCACCTGACAATCGCCTGGTTGCCACAGGCTCATTGGACACCTGTGCAATT GTATATGAAATAGACAAGCCAGCATCCAGCCGCATCACCGTAAAAGGAGCTCATCTTGGT GGAGTCCATGGTTTAACCTTTGTCGATAATGATAGTCTGGTGACTGCTGGGGAGGATGCA TGCATCCGAGTTTGGAAGCTGGTGCCACAATAG

Peptide Sequence

PEP ID	Os01t0125800-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:1413839:1418982:1 gene:Os01g0125800 transcript:Os01t0125800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Actin-interacting protein 1 description:Actin-interacting, WD40-repeat protein, Actin turnover (Os01t0125800-01)
Sequence	MAQLQETYACSPATERGRGILLAGDPKTETIAYCTGRSVIIRRLDAPLDCWAYPDHAYPT TVARFSPNGEWVASADASGCVRVWGRYGDRALKAEFRPLSGRVDDLRWSPDGLRIVVSGD GKGKSFVRAFVWDSGSTVGEFDGHSKRVLSCDFKPTRPFRIVTCGEDFLANYYEGPPFKF KHSIRDHSNFVNCIRYAPDGSKFISVSSDKKGLIYDGKTGDKIGELSSEGSHTGSIYAVS WSPDSKQVLTVSADKTAKVWDILEDASGKLNRTLACPGTGGVDDMLVGCLWQNDYLVTVS LGGTFNVFSASNPDKEPVTFAGHLKTVSSLAFFPQSNPKTILSTSYDGVIMRWIKGVGYG GRLMRKNNTQIKCFTVAEEELVTSGYDNKVFRIPLNGDQCGDAESVDVGGQPNALNLAIQ KPEFALVTTDSGIVLLHKSTVISTTKVNYTITSSAVSPDGTEAIVGAQDGKLRIYSINGD TVTEEALIEKHRGAITCIHYSPDVSMFASADANREAVVWDRATREIKLKNMLFHSARINC LAWSPDNRLVATGSLDTCAIVYEIDKPASSRITVKGAHLGGVHGLTFVDNDSLVTAGEDA CIRVWKLVPQ

Transcript Sequence

Transcript ID	Os01t0125800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:1413839:1418982:1 gene:Os01g0125800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Actin-interacting protein 1 description:Actin-interacting, WD40-repeat protein, Actin turnover (Os01t0125800-01)
Sequence	GTTATTAACCACCACCTCCTCCACCACTCGCGACCCCACCCCAGATCAAGCGGAGGAGGA GGAAGAGGAGAGGGCAAAAATGGCGCAGCTGCAGGAGACGTACGCGTGCTCGCCGGCGAC GGAGCGCGGCCGCGGGATCCTCCTCGCGGGGGACCCCAAGACGGAGACGATCGCCTACTG CACGGGCCGCAGCGTCATCATCCGCCGCCTCGACGCGCCGCTCGACTGCTGGGCCTACCC GGACCACGCCTACCCGACCACCGTCGCCCGCTTCTCCCCCAACGGCGAGTGGGTCGCCTC CGCCGACGCCTCCGGCTGCGTCCGCGTCTGGGGGCGCTACGGCGACCGCGCCCTCAAGGC CGAGTTCCGCCCCCTCTCCGGCCGCGTCGACGACCTCCGCTGGTCCCCCGATGGCCTCCG CATCGTCGTGTCCGGGGACGGCAAGGGGAAGTCCTTCGTCCGCGCTTTCGTGTGGGACTC TGGCAGCACTGTTGGTGAGTTTGACGGGCACTCAAAGAGAGTTCTGAGCTGTGACTTTAA GCCAACCCGGCCGTTCCGCATTGTGACATGTGGTGAAGATTTTCTGGCAAACTACTATGA AGGACCACCATTTAAATTCAAGCATTCCATAAGGGATCACTCAAACTTTGTTAACTGTAT CCGATATGCTCCTGATGGGAGTAAGTTTATCAGCGTGAGTTCAGATAAGAAGGGTTTGAT ATATGATGGCAAAACTGGAGACAAGATTGGAGAACTTTCCAGCGAAGGCAGTCACACAGG GAGTATATATGCTGTTAGCTGGAGTCCTGACAGCAAACAAGTTCTGACAGTTTCTGCTGA TAAAACTGCCAAAGTCTGGGACATACTAGAAGACGCTAGTGGGAAATTGAACAGAACTTT GGCTTGTCCTGGTACAGGTGGAGTAGATGACATGCTTGTGGGTTGCCTCTGGCAGAATGA TTATCTTGTGACAGTCTCTCTTGGTGGGACATTTAATGTGTTCTCTGCAAGTAATCCAGA CAAAGAGCCAGTAACCTTTGCAGGACATTTGAAGACTGTTAGTTCTTTGGCCTTTTTCCC ACAAAGTAACCCCAAAACTATACTGTCCACAAGTTACGATGGCGTTATCATGAGATGGAT AAAGGGTGTTGGATATGGTGGCAGATTGATGCGAAAGAACAACACCCAGATTAAATGCTT TACTGTAGCAGAAGAGGAACTCGTCACCTCTGGATATGATAACAAGGTTTTCAGAATTCC TCTTAATGGAGATCAGTGTGGAGATGCTGAATCAGTTGATGTAGGAGGTCAGCCAAATGC TTTGAACCTTGCAATTCAAAAACCTGAATTTGCACTGGTCACAACAGATTCTGGGATAGT ATTGCTGCACAAGTCAACGGTCATTTCTACAACCAAAGTTAATTATACTATCACTTCATC TGCTGTTTCTCCTGATGGCACTGAAGCCATCGTTGGTGCACAAGATGGGAAACTGCGTAT CTATTCCATCAATGGGGATACAGTTACAGAAGAAGCATTAATTGAGAAGCACCGGGGTGC TATTACTTGCATACATTATTCGCCCGATGTTTCCATGTTTGCTTCTGCTGATGCCAACAG GGAAGCCGTTGTGTGGGATCGGGCAACGAGAGAGATCAAGCTGAAGAACATGTTGTTCCA CTCAGCTCGGATAAACTGCCTGGCTTGGTCACCTGACAATCGCCTGGTTGCCACAGGCTC ATTGGACACCTGTGCAATTGTATATGAAATAGACAAGCCAGCATCCAGCCGCATCACCGT AAAAGGAGCTCATCTTGGTGGAGTCCATGGTTTAACCTTTGTCGATAATGATAGTCTGGT GACTGCTGGGGAGGATGCATGCATCCGAGTTTGGAAGCTGGTGCCACAATAGATGTTCTC CCTGATGTTGCCTGTTGGGCGTGTCTTCGTCACTTGATTGAAATAAACATTGTTTGCACT TGTCCCTTAGGGTGTCTGCGATTTTTTTCCTATGTTGCGACGCAGTTGGCCTTGAGTTGC ATTTTCTTTTTGTTGCATTTCTGGAAGAACTTGTTGATTGTTGTTATTTTATCCCTGCGT CTGATTTTGTTAGGAACTGAGAATTCAGGGATGCTGTCTTTTTTTTTCCTTCCTCCGTTT GTAACCTGCACATGGCTGTATCTGTTTGTAATTTTGACCGATCAGCTGCATAATGCTTTC CTCTGCTGCCTTTTACATGT