Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0125600-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:1404816:1406889:1 gene:Os01g0125600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Heavy metal transport/detoxification protein domain containing protein. (Os01t0125600-01)
Sequence

ATGACCAAAGATGAGGATTTCAAGCTGGTCAAGATCCAGACCCATGTACTGAGGGTGAAC
ATACACTGTGATGGCTGTAAGCACAAGGTGAAGAAGCTGCTTCAGAAGATTGAAGGCGTG
TACTCGGTGGCCTTAGATGTAGACAACCATAAGGTCACAGTGACTGGCAATGTGGACTCC
GATACATTGATTAGGAAGCTCACCAGAGGAGGTAAGCATGCAGAGCTGTGGTCACAGCAG
AAGGGTGGCAGCAACCAGGGCCACAAGGGCAGCAACAACCAGCAGAAGCAGCAGCAGCAG
CAAGGGCAGCAGCAGCATGGACAGCAGCATCAGAAGCAAGGTGCCAACCCAAGCAAGGAT
GGCAACAAGAACAACAACATCCTCAAGGACCAGGGCAAGCAAGGAGGTGTTGGAGGCCTC
ATCCAGGGCCTCAAGGCCTTCAAGAACCAGCACAGCAAGAACCAGCTCCCTGAGCTTGAT
TCAGAGGATGATGACTTGTATGATGACGAAGACGATGAGTTTGATGATGACTATGAGGAC
GATCTCCGCTTTCTTGGAGACAAGATGAGCCAGCTTGGTTTCCTCAGGCAGCAAGCTGCA
GCTGCAGCGGCGGCCAATGTCAAGAACAAGAATGCCAACACTGCCACCGTCAACAACCAC
CACAACAACGTCAATGGCAAGAAAGGTGGTGGCGGCGGTGGCAGTGCTGGAGGTGGAAAT
CACCATCAGAACAACCACCACCAGAACCAGAAGAATCCCAATGTGATCAACATGGCAGCA
GCCAATGCCAAGATGGCCAATGGTGCCCAGAAGAACACTGGCGCCATCAATGGAATGATG
GGCCTCAACCATGGCCTCGGAACAGCCGGTGCCACTCCTGGTTTTCAGGGCTACACCGGC
TTCAACCACCCGTCCTATGCTTCTGCCGGCTATGGAGGGCTTCAACAACAGCACCTCCAG
CAACAACAGCAGAGCAACAATCTCATGGCAAGCATGCAGGGTTACCATCATCACCCAGCA
GCCACGGCGGCGATGATGAACAACCTGAGGGGTCTAAACAACAACATGATGATGATGCAT
CAGCCACAACAGCAGCCACAGATGATGTACCACCGGTCTCCTCAGATTAGCCCTTACACC
GCCTACTACAACCCTTACAGCTACTACTACCACCCTGGCGCCGCCGGTTATCATCCCGCC
AGCAATGGCGATGTGGAGACCATGTTCAGCGATGAGAATACCAAGGGTTGTGTTGTCATG
TAG

Peptide Sequence

PEP ID

Os01t0125600-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:1404816:1406889:1 gene:Os01g0125600 transcript:Os01t0125600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Heavy metal transport/detoxification protein domain containing protein. (Os01t0125600-01)
Sequence

MTKDEDFKLVKIQTHVLRVNIHCDGCKHKVKKLLQKIEGVYSVALDVDNHKVTVTGNVDS
DTLIRKLTRGGKHAELWSQQKGGSNQGHKGSNNQQKQQQQQGQQQHGQQHQKQGANPSKD
GNKNNNILKDQGKQGGVGGLIQGLKAFKNQHSKNQLPELDSEDDDLYDDEDDEFDDDYED
DLRFLGDKMSQLGFLRQQAAAAAAANVKNKNANTATVNNHHNNVNGKKGGGGGGSAGGGN
HHQNNHHQNQKNPNVINMAAANAKMANGAQKNTGAINGMMGLNHGLGTAGATPGFQGYTG
FNHPSYASAGYGGLQQQHLQQQQQSNNLMASMQGYHHHPAATAAMMNNLRGLNNNMMMMH
QPQQQPQMMYHRSPQISPYTAYYNPYSYYYHPGAAGYHPASNGDVETMFSDENTKGCVVM

Transcript Sequence

Transcript ID

Os01t0125600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:1404816:1406889:1 gene:Os01g0125600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Heavy metal transport/detoxification protein domain containing protein. (Os01t0125600-01)
Sequence

CAACGGTACAAGAACCACCATCACTTCCCTACCACTCCACTACTAGCCACTGGCCATTGC
TCCTCTCCTCCCACTCTTCTTCTCCATCTCCTCTCCTCTCTTCTCTCATTCTCTTCCCTG
CAACTTGCAAACAGTGCTCTGCAGAATGACCAAAGATGAGGATTTCAAGCTGGTCAAGAT
CCAGACCCATGTACTGAGGGTGAACATACACTGTGATGGCTGTAAGCACAAGGTGAAGAA
GCTGCTTCAGAAGATTGAAGGCGTGTACTCGGTGGCCTTAGATGTAGACAACCATAAGGT
CACAGTGACTGGCAATGTGGACTCCGATACATTGATTAGGAAGCTCACCAGAGGAGGTAA
GCATGCAGAGCTGTGGTCACAGCAGAAGGGTGGCAGCAACCAGGGCCACAAGGGCAGCAA
CAACCAGCAGAAGCAGCAGCAGCAGCAAGGGCAGCAGCAGCATGGACAGCAGCATCAGAA
GCAAGGTGCCAACCCAAGCAAGGATGGCAACAAGAACAACAACATCCTCAAGGACCAGGG
CAAGCAAGGAGGTGTTGGAGGCCTCATCCAGGGCCTCAAGGCCTTCAAGAACCAGCACAG
CAAGAACCAGCTCCCTGAGCTTGATTCAGAGGATGATGACTTGTATGATGACGAAGACGA
TGAGTTTGATGATGACTATGAGGACGATCTCCGCTTTCTTGGAGACAAGATGAGCCAGCT
TGGTTTCCTCAGGCAGCAAGCTGCAGCTGCAGCGGCGGCCAATGTCAAGAACAAGAATGC
CAACACTGCCACCGTCAACAACCACCACAACAACGTCAATGGCAAGAAAGGTGGTGGCGG
CGGTGGCAGTGCTGGAGGTGGAAATCACCATCAGAACAACCACCACCAGAACCAGAAGAA
TCCCAATGTGATCAACATGGCAGCAGCCAATGCCAAGATGGCCAATGGTGCCCAGAAGAA
CACTGGCGCCATCAATGGAATGATGGGCCTCAACCATGGCCTCGGAACAGCCGGTGCCAC
TCCTGGTTTTCAGGGCTACACCGGCTTCAACCACCCGTCCTATGCTTCTGCCGGCTATGG
AGGGCTTCAACAACAGCACCTCCAGCAACAACAGCAGAGCAACAATCTCATGGCAAGCAT
GCAGGGTTACCATCATCACCCAGCAGCCACGGCGGCGATGATGAACAACCTGAGGGGTCT
AAACAACAACATGATGATGATGCATCAGCCACAACAGCAGCCACAGATGATGTACCACCG
GTCTCCTCAGATTAGCCCTTACACCGCCTACTACAACCCTTACAGCTACTACTACCACCC
TGGCGCCGCCGGTTATCATCCCGCCAGCAATGGCGATGTGGAGACCATGTTCAGCGATGA
GAATACCAAGGGTTGTGTTGTCATGTAGTAGGGATGCTGTTACAGTGTTACAATGTAGAG
GTTGGTGATGAAGCATGGGAATGGTTATGC