Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0121100-02
CDS Infomation

cds chromosome:IRGSP-1.0:1:1183466:1186699:1 gene:Os01g0121100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to SLL2. (Os01t0121100-01);Similar to SLL2. (Os01t0121100-02)
Sequence

ATGGCGGGGATACGGTGGCCGCCCGAGGACCCGGAGATCTTCCCGTCGAGGATGGTGACC
GGCGGCGGCGGCGGGGGCGCGGGAGGAGGACCCCCCGGGCCCCCGGGGGAGATGGCCTCC
GACGACGACCGGTCGGTGGCGGCGGACTCGTGGTCCATCAAGAGCGACTACGGGAGCACC
CTCGACGACGAGCAGCGGTACGCCGACGCCGCCGAGGTCCTCCTCGCCTCCTCCTCCTCC
TCCTCCGCCGCCGCCTCCGGCCCCGCCGCCGCCACGACGGCGTCGGTCGCCGCCAACCCC
TCCGGAGATTTCAGCTTTGACAAGGACGTGCCAGACTCCGCCGATATGGAGCCGCCGTTG
CTGGGCCTGCCGAATTATCATCAGGATGGTTCTTATGCAGAATACCTTGCTAATTTTCAA
GAACGGAGCCACACAGATGACTGGTTTGGCACGGAGAACATGGATGTCCTCGTAAGCTGG
ACGAAAAACTTATGTTCCAACAAGGATTTGCGTAGCTGCAGTGTACTCGACATAGGAACT
GGGAGCGGTCGACTCTCGCAACAGCTTGCAAAGCAAGGGTTCTCTGATCTGACTGGGATC
GACCACAGTGAAGGTGCAATTGAGGTTGCTCGTAATCTTGCTATCCGTGATGGGTTTGAG
CACATTAATTTCTTGGTTGATGATGTGTTAGAGTCAAAGTTGGAGAGGAGATTTGAACTT
GTGATGGATGAAGGAACTCTGGACACGATTGGGTTGCACCCCGATGGACCTGTAAAGAGA
ATGATGTATTGGCAGTCGGTTGCAGGGCTGGTTTCTCCTGGTGGCATACTGGTCATCACA
TCATGTAGCAGAACCAAGGATGAGTTGGTCCAGGAGGTAGAGAGCTTCAACCAGAGAAAG
CTCAGTGCTATGGGCTCCGAAGGTGCGCAGGCCAGTGATACTGCGGTGTTCAAGTACATC
GACCATGTCCAAACGTACCCCATCGTGGATAGTTCCTGCATCACGACCGTTGCTTTCTCG
CATAGCTGA

Peptide Sequence

PEP ID

Os01t0121100-02
PEP Infomation

pep chromosome:IRGSP-1.0:1:1183466:1186699:1 gene:Os01g0121100 transcript:Os01t0121100-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to SLL2. (Os01t0121100-01);Similar to SLL2. (Os01t0121100-02)
Sequence

MAGIRWPPEDPEIFPSRMVTGGGGGGAGGGPPGPPGEMASDDDRSVAADSWSIKSDYGST
LDDEQRYADAAEVLLASSSSSSAAASGPAAATTASVAANPSGDFSFDKDVPDSADMEPPL
LGLPNYHQDGSYAEYLANFQERSHTDDWFGTENMDVLVSWTKNLCSNKDLRSCSVLDIGT
GSGRLSQQLAKQGFSDLTGIDHSEGAIEVARNLAIRDGFEHINFLVDDVLESKLERRFEL
VMDEGTLDTIGLHPDGPVKRMMYWQSVAGLVSPGGILVITSCSRTKDELVQEVESFNQRK
LSAMGSEGAQASDTAVFKYIDHVQTYPIVDSSCITTVAFSHS

Transcript Sequence

Transcript ID

Os01t0121100-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:1183466:1186699:1 gene:Os01g0121100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to SLL2. (Os01t0121100-01);Similar to SLL2. (Os01t0121100-02)
Sequence

AGGGCTAGGGCTAGGGTTTGAGGTCGGGCGCGCGCGGCATGGCGGGGATACGGTGGCCGC
CCGAGGACCCGGAGATCTTCCCGTCGAGGATGGTGACCGGCGGCGGCGGCGGGGGCGCGG
GAGGAGGACCCCCCGGGCCCCCGGGGGAGATGGCCTCCGACGACGACCGGTCGGTGGCGG
CGGACTCGTGGTCCATCAAGAGCGACTACGGGAGCACCCTCGACGACGAGCAGCGGTACG
CCGACGCCGCCGAGGTCCTCCTCGCCTCCTCCTCCTCCTCCTCCGCCGCCGCCTCCGGCC
CCGCCGCCGCCACGACGGCGTCGGTCGCCGCCAACCCCTCCGGAGATTTCAGCTTTGACA
AGGACGTGCCAGACTCCGCCGATATGGAGCCGCCGTTGCTGGGCCTGCCGAATTATCATC
AGGATGGTTCTTATGCAGAATACCTTGCTAATTTTCAAGAACGGAGCCACACAGATGACT
GGTTTGGCACGGAGAACATGGATGTCCTCGTAAGCTGGACGAAAAACTTATGTTCCAACA
AGGATTTGCGTAGCTGCAGTGTACTCGACATAGGAACTGGGAGCGGTCGACTCTCGCAAC
AGCTTGCAAAGCAAGGGTTCTCTGATCTGACTGGGATCGACCACAGTGAAGGTGCAATTG
AGGTTGCTCGTAATCTTGCTATCCGTGATGGGTTTGAGCACATTAATTTCTTGGTTGATG
ATGTGTTAGAGTCAAAGTTGGAGAGGAGATTTGAACTTGTGATGGATGAAGGAACTCTGG
ACACGATTGGGTTGCACCCCGATGGACCTGTAAAGAGAATGATGTATTGGCAGTCGGTTG
CAGGGCTGGTTTCTCCTGGTGGCATACTGGTCATCACATCATGTAGCAGAACCAAGGATG
AGTTGGTCCAGGAGGTAGAGAGCTTCAACCAGAGAAAGCTCAGTGCTATGGGCTCCGAAG
GTGCGCAGGCCAGTGATACTGCGGTGTTCAAGTACATCGACCATGTCCAAACGTACCCCA
TCGTGGATAGTTCCTGCATCACGACCGTTGCTTTCTCGCATAGCTGAAACATATATGTAT
GCTCTCTCTTTTTCTCCCTAACTTTGCCATCCCAGTGTGTATCCCCTTTACCCTAGTTCT
CTTCGGGTGATAGTCTACTTTGCCAGATAGGTTATTCAGTTGTAACGTTGCTTTGTTATG
TCTTGAATTCTTGATGGATGTACTCTTTTGAAAGCGTGACAAGCAACACTATTACATCAG
ATATGCAGAACTCTGTGCTATGAAAGCTGAATCAACAATTCACCAATC