Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0112500-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:648288:651869:-1 gene:Os01g0112500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Plakoglobin/armadillo/beta-catenin-like protein (Fragment). (Os01t0112500-01);Similar to Plakoglobin/armadillo/beta-catenin-like protein (Fragment). (Os01t0112500-02)
Sequence	ATGGAGTCGCCGCCGACCGCCGCCGCCGCCGCCGCCGCAGCCGAGCGACCGTCCGAGGCA GCCGCGCTGCGTGCGCTCGTGGACCGCGTGCGCGCCGGGGAGGTGGAGGCCGCGCGCGAG GTGCGCCGCCTCACCCGCTCCTCCTCCAGGCACCGCCGCAAGCTCGCCGCCGCCGTCGAG CCCCTCGTCGCCATGCTCCGCTCCCCCGCCCCCGACGCCGGCGAGGCCGCGCTCCTCGCC CTCCTCAACCTCGCCGTCAGGGACGAGAGGAACAAGACCAAGATAGTGGATGCTGGAGCA CTGGAGCCACTGCTGGGTTATTTGCAATCAAGTGATCTGAACTTACAGGAGTACGCAACT GCTGCCCTTCTTACACTCTCAGCCTCATCTACAACTAAACCAATTATAAGTGCTTCTGGA GCAATCCCACTGCTGGTAAAGGTCCTAAAAGAAGGAAATTCACAAGCCAAGAATGACTCA GTGATGGCCCTTTACAACCTCTCCACGGTTACAGATAACCTCCAGACGATCCTTTCTGTT CAACCTATCCCCTCTTTGATAGAGTTACTGAAGGGTGGAAAGAGATCATCCAAAACAGCT GACAAGTGTTGTGCCCTCTTGGAGTCATTGCTTTCCTTCGATCAAGGACGAGCAGCTTTG ATTTCTGAGGAAGGTGGAGTGCTCACCATTGTGGAGGTACTTGAGGAAGGGTCCCTTCAA GGTAGGGAGCATGCGGTGGGAGCTCTACTAACTATGTGCGAGAGTGATCGCAATAAATAT AGAGATATCATTCTAAACGAGGGGGCAATTCCTGGTCTTCTTGAACTCACAGTCCATGGT ACACCCAAGTCCAGAGTGAAGGCTCATGTTCTTCTTGACTTGCTGCGCAACTCGCCATAT TCAAGATCAAAGCTGCCGGCAGACACACTCGAGAACATTGTAAGCAACATTGCTTCACAG ATAGATGGCGAGGACCGCGGTGGGAAAGCTAAGAAGATGCTTGCTGAGATGGTGAAGGTT AGCATGGAGCAAAGCTTGAGGCATTTGCAGCGTCGAGCTTCTTTTGCATGA

Peptide Sequence

PEP ID	Os01t0112500-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:648288:651869:-1 gene:Os01g0112500 transcript:Os01t0112500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Plakoglobin/armadillo/beta-catenin-like protein (Fragment). (Os01t0112500-01);Similar to Plakoglobin/armadillo/beta-catenin-like protein (Fragment). (Os01t0112500-02)
Sequence	MESPPTAAAAAAAAERPSEAAALRALVDRVRAGEVEAAREVRRLTRSSSRHRRKLAAAVE PLVAMLRSPAPDAGEAALLALLNLAVRDERNKTKIVDAGALEPLLGYLQSSDLNLQEYAT AALLTLSASSTTKPIISASGAIPLLVKVLKEGNSQAKNDSVMALYNLSTVTDNLQTILSV QPIPSLIELLKGGKRSSKTADKCCALLESLLSFDQGRAALISEEGGVLTIVEVLEEGSLQ GREHAVGALLTMCESDRNKYRDIILNEGAIPGLLELTVHGTPKSRVKAHVLLDLLRNSPY SRSKLPADTLENIVSNIASQIDGEDRGGKAKKMLAEMVKVSMEQSLRHLQRRASFA

Transcript Sequence

Transcript ID	Os01t0112500-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:648288:651869:-1 gene:Os01g0112500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Plakoglobin/armadillo/beta-catenin-like protein (Fragment). (Os01t0112500-01);Similar to Plakoglobin/armadillo/beta-catenin-like protein (Fragment). (Os01t0112500-02)
Sequence	CTGCTTCTCTCTCTCTCTCTCTACCCAGCGAGCAAGAGAGAGAGACAGGGCAAGGAAGAA GGAGGAGACCAACCCTAGCTAAGCCCCTCCCTCCTCTACGCTCTACTGCACAGGAGAGGA GGAGATGGAGTCGCCGCCGACCGCCGCCGCCGCCGCCGCCGCAGCCGAGCGACCGTCCGA GGCAGCCGCGCTGCGTGCGCTCGTGGACCGCGTGCGCGCCGGGGAGGTGGAGGCCGCGCG CGAGGTGCGCCGCCTCACCCGCTCCTCCTCCAGGCACCGCCGCAAGCTCGCCGCCGCCGT CGAGCCCCTCGTCGCCATGCTCCGCTCCCCCGCCCCCGACGCCGGCGAGGCCGCGCTCCT CGCCCTCCTCAACCTCGCCGTCAGGGACGAGAGGAACAAGACCAAGATAGTGGATGCTGG AGCACTGGAGCCACTGCTGGGTTATTTGCAATCAAGTGATCTGAACTTACAGGAGTACGC AACTGCTGCCCTTCTTACACTCTCAGCCTCATCTACAACTAAACCAATTATAAGTGCTTC TGGAGCAATCCCACTGCTGGTAAAGGTCCTAAAAGAAGGAAATTCACAAGCCAAGAATGA CTCAGTGATGGCCCTTTACAACCTCTCCACGGTTACAGATAACCTCCAGACGATCCTTTC TGTTCAACCTATCCCCTCTTTGATAGAGTTACTGAAGGGTGGAAAGAGATCATCCAAAAC AGCTGACAAGTGTTGTGCCCTCTTGGAGTCATTGCTTTCCTTCGATCAAGGACGAGCAGC TTTGATTTCTGAGGAAGGTGGAGTGCTCACCATTGTGGAGGTACTTGAGGAAGGGTCCCT TCAAGGTAGGGAGCATGCGGTGGGAGCTCTACTAACTATGTGCGAGAGTGATCGCAATAA ATATAGAGATATCATTCTAAACGAGGGGGCAATTCCTGGTCTTCTTGAACTCACAGTCCA TGGTACACCCAAGTCCAGAGTGAAGGCTCATGTTCTTCTTGACTTGCTGCGCAACTCGCC ATATTCAAGATCAAAGCTGCCGGCAGACACACTCGAGAACATTGTAAGCAACATTGCTTC ACAGATAGATGGCGAGGACCGCGGTGGGAAAGCTAAGAAGATGCTTGCTGAGATGGTGAA GGTTAGCATGGAGCAAAGCTTGAGGCATTTGCAGCGTCGAGCTTCTTTTGCATGATCAGG TGATTGGCACATTTTGCAATGGAAGTAGACATAGTGGAAATAATGAGTTTGCTGGTGATG CCGGTCCAGGCCTTGACAGGACCGAGTGACTGGTTTGAGCGCTCATATACTTAAGCTGTT GAAGTAGTAGTTCCTTTTCCATTTCAATCTTGTGTGTTCTGAACAAGAACATTTTTTTCT TCTGTTTCTCATGTGCCCTTCCTGCACTTTGTGCATGAAAGACCCCAAAAAAAGC