Gene sequences

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SNP Detection
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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0111200-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:588917:593714:1 gene:Os01g0111200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Like-Sm ribonucleoprotein (LSM)-related domain domain containing protein. (Os01t0111200-01)
Sequence	ATGGCGGCGGAAGCCCCACCGTCGTCGTCGACCTCCTCCTCCGCGGGGCCCCCCGCCGCG GCCGGCTCCAGCGGCGGCGGGGCGGCGGCCTCGCCGGACTCGTACATCGGGAGCCTCATC AGTTTGACATCCAAGAGCGAGATCAGGTACGAGGGCATCCTCTACAACATCAACACCGAG GAGTCCAGCATCGGCTTGCGCAATGTTCGATCATTTGGAACCGAAGGGCGCAAGAAAGAT GGAGTGCAAATTCCTGCTAGCACCAAAGTTTATGAGTACATACTTTTCCGGGGAAGTGAT ATCAAGGATTTGCAAGTTAAGTCATCACCACCTCCACCGCCACCACCACAACCAGCTGCC CCGCACAATGATCCTGCCATAATACAGTCGCACTACTCTCAGCCAGCATCGGCTTCTTCA AGTTTGCCTTCTGCTGGAAGTGCAGTATTGCCAGACCTCAGCTCCCAGGCAGCTCAATAT GGGCTTCAGAGGCCAAGTTTTCAGAGCAATATTCCTCTATATCAACCTGGGAGTGTTCCA TGGGGATCCTCTGCTCCACCTTCTGCTGGAAATGCATCAGGCCTTTCAGTTCCCCCAATG TATTGGCAGGGATATTATCCACCTGGTGGGCTTCCACCTCATTTGCAGCAACCTCCTTTG CTCCAGCCAGGATTATCAGTTCCCCAGGGTCTCCAATATGCAGGATTGAATCCCACTCTA TCGTCAGGGCCACAAAAACTGTCAGAACTGCAGCCCCCCTTGCTGCAACCACCTGGTACT ACCCAAGGCCCTTCCTCAGGTATCCTGCCCACTACAACAGCACCTTCTTCTGCTAACTTA CTATCTCCAGAAACTTCAAAGCCCCTTCTGCCGAACATGGGTCCTTTGTTTACTCCTCCA GTTCCATCTGTGGGCGCCACCCTTCCTTTAGCTAGCCTGCCAACATCCATTGCTGAAAGT AGTGCAATGGCCCCACATAATTTTAGTTCGCTTGTGAGCAATAAGACTGCGGATATTCCA GGTTCAACATTGGCATACCAATCAGTGTCACAGGCAGTTTCTTCGACTGTTGCTTCATCT AGCTCAGCCCATATGGATATGCCCGTACCTTTGTTGGCATCATCAGGTCAACTACTGCAG AATGCTCCATCGATGCTTTCATCATCTCAGTCCATGCAGACACCTTTACAGATGAGCAGC AAAGATTTCAAGGCAGTTGAATCAAAAACTAGGGTTGTAGAACCATTGCTACCTGATCCA CCGTCACGTGCTCTTCCTGAAAATAATGAGCCTATATTGCCATTGCCGAAACAAACACCT CAAAAGTACAATGGAGCTGGTTCACACAGCAATCACCACTACAGGGGCCGTGGAAGAGGT AGAGGCAGCGCGTTTTCGCAGTCAGTAACAAATTTTACTGAAGAATTTGATTTCATGGCC ATGAATGAGAAGTTTAACAAAGATGAAGTCTGGGGTCATCTTGGTAAGAAATCCCATTCA AGGGACAAAGATGGTGAGCTGGGCGATGATGTGTTTGATGAAGACCTGGAGGATGAGGAA ACAGAAAATCCTGAGCTAGCTGCTAAGCCTGTTTATGTCAAGGATGACTTTTTTGATTCC CTCACTAGTGGAACATTTGGACGTGGAGGGCAAAACGGGAGGTCAAGATTTTCCGAACAG CGCAAACTAGATACAGAGACTTTTGGTGATTTCCCAAGGCATCGCCAGCCCTATCGTGGT GGGGGGCGTGGTTACCGTGGCGGCGGTCGCGCCCGTGGGTCATACTACGGTGGCAGAGGG TATGGAAGCATGGGAGCAAGGGGTGGGCAGGGTAATTCTTACCCTCACCGTGGTTCCTAC TGA

Peptide Sequence

PEP ID	Os01t0111200-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:588917:593714:1 gene:Os01g0111200 transcript:Os01t0111200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Like-Sm ribonucleoprotein (LSM)-related domain domain containing protein. (Os01t0111200-01)
Sequence	MAAEAPPSSSTSSSAGPPAAAGSSGGGAAASPDSYIGSLISLTSKSEIRYEGILYNINTE ESSIGLRNVRSFGTEGRKKDGVQIPASTKVYEYILFRGSDIKDLQVKSSPPPPPPPQPAA PHNDPAIIQSHYSQPASASSSLPSAGSAVLPDLSSQAAQYGLQRPSFQSNIPLYQPGSVP WGSSAPPSAGNASGLSVPPMYWQGYYPPGGLPPHLQQPPLLQPGLSVPQGLQYAGLNPTL SSGPQKLSELQPPLLQPPGTTQGPSSGILPTTTAPSSANLLSPETSKPLLPNMGPLFTPP VPSVGATLPLASLPTSIAESSAMAPHNFSSLVSNKTADIPGSTLAYQSVSQAVSSTVASS SSAHMDMPVPLLASSGQLLQNAPSMLSSSQSMQTPLQMSSKDFKAVESKTRVVEPLLPDP PSRALPENNEPILPLPKQTPQKYNGAGSHSNHHYRGRGRGRGSAFSQSVTNFTEEFDFMA MNEKFNKDEVWGHLGKKSHSRDKDGELGDDVFDEDLEDEETENPELAAKPVYVKDDFFDS LTSGTFGRGGQNGRSRFSEQRKLDTETFGDFPRHRQPYRGGGRGYRGGGRARGSYYGGRG YGSMGARGGQGNSYPHRGSY

Transcript Sequence

Transcript ID	Os01t0111200-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:588917:593714:1 gene:Os01g0111200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Like-Sm ribonucleoprotein (LSM)-related domain domain containing protein. (Os01t0111200-01)
Sequence	GCATCGCATCCCTAACCCTAGCTCCCGGCCCTCGCCCACACCCGCGCCCGCGGCGGCCAT GGCGGCGGAAGCCCCACCGTCGTCGTCGACCTCCTCCTCCGCGGGGCCCCCCGCCGCGGC CGGCTCCAGCGGCGGCGGGGCGGCGGCCTCGCCGGACTCGTACATCGGGAGCCTCATCAG TTTGACATCCAAGAGCGAGATCAGGTACGAGGGCATCCTCTACAACATCAACACCGAGGA GTCCAGCATCGGCTTGCGCAATGTTCGATCATTTGGAACCGAAGGGCGCAAGAAAGATGG AGTGCAAATTCCTGCTAGCACCAAAGTTTATGAGTACATACTTTTCCGGGGAAGTGATAT CAAGGATTTGCAAGTTAAGTCATCACCACCTCCACCGCCACCACCACAACCAGCTGCCCC GCACAATGATCCTGCCATAATACAGTCGCACTACTCTCAGCCAGCATCGGCTTCTTCAAG TTTGCCTTCTGCTGGAAGTGCAGTATTGCCAGACCTCAGCTCCCAGGCAGCTCAATATGG GCTTCAGAGGCCAAGTTTTCAGAGCAATATTCCTCTATATCAACCTGGGAGTGTTCCATG GGGATCCTCTGCTCCACCTTCTGCTGGAAATGCATCAGGCCTTTCAGTTCCCCCAATGTA TTGGCAGGGATATTATCCACCTGGTGGGCTTCCACCTCATTTGCAGCAACCTCCTTTGCT CCAGCCAGGATTATCAGTTCCCCAGGGTCTCCAATATGCAGGATTGAATCCCACTCTATC GTCAGGGCCACAAAAACTGTCAGAACTGCAGCCCCCCTTGCTGCAACCACCTGGTACTAC CCAAGGCCCTTCCTCAGGTATCCTGCCCACTACAACAGCACCTTCTTCTGCTAACTTACT ATCTCCAGAAACTTCAAAGCCCCTTCTGCCGAACATGGGTCCTTTGTTTACTCCTCCAGT TCCATCTGTGGGCGCCACCCTTCCTTTAGCTAGCCTGCCAACATCCATTGCTGAAAGTAG TGCAATGGCCCCACATAATTTTAGTTCGCTTGTGAGCAATAAGACTGCGGATATTCCAGG TTCAACATTGGCATACCAATCAGTGTCACAGGCAGTTTCTTCGACTGTTGCTTCATCTAG CTCAGCCCATATGGATATGCCCGTACCTTTGTTGGCATCATCAGGTCAACTACTGCAGAA TGCTCCATCGATGCTTTCATCATCTCAGTCCATGCAGACACCTTTACAGATGAGCAGCAA AGATTTCAAGGCAGTTGAATCAAAAACTAGGGTTGTAGAACCATTGCTACCTGATCCACC GTCACGTGCTCTTCCTGAAAATAATGAGCCTATATTGCCATTGCCGAAACAAACACCTCA AAAGTACAATGGAGCTGGTTCACACAGCAATCACCACTACAGGGGCCGTGGAAGAGGTAG AGGCAGCGCGTTTTCGCAGTCAGTAACAAATTTTACTGAAGAATTTGATTTCATGGCCAT GAATGAGAAGTTTAACAAAGATGAAGTCTGGGGTCATCTTGGTAAGAAATCCCATTCAAG GGACAAAGATGGTGAGCTGGGCGATGATGTGTTTGATGAAGACCTGGAGGATGAGGAAAC AGAAAATCCTGAGCTAGCTGCTAAGCCTGTTTATGTCAAGGATGACTTTTTTGATTCCCT CACTAGTGGAACATTTGGACGTGGAGGGCAAAACGGGAGGTCAAGATTTTCCGAACAGCG CAAACTAGATACAGAGACTTTTGGTGATTTCCCAAGGCATCGCCAGCCCTATCGTGGTGG GGGGCGTGGTTACCGTGGCGGCGGTCGCGCCCGTGGGTCATACTACGGTGGCAGAGGGTA TGGAAGCATGGGAGCAAGGGGTGGGCAGGGTAATTCTTACCCTCACCGTGGTTCCTACTG AAGGGGCTGATGATGATAGCAGATATGTACTGTCAGTCATACCGGCTGGTGCTGTATCCT TCACCATGATGCACCAGCTCTTACTGTTGTCCAAATAAATGGAACTTAGCGTGCCCCTTG TGTTGGCAGGGGCCGTATAGGTTTGATGTCCGGTGGTTTATACCCCTAGAGTTGTCAGTA GATGGGGGCAGCTGATGCTCTATCATCATATATAGTAGGTGCAAAGTGTGCCTCTTACTC TTTAGGGTGTTACCATGCGAGTGGGATTTAGTTTGTATAGGCGGATCTCATTCCTGGTAC ACCATGCTGGGCTTAACTCACTCGGTGACTCTTTTGTCTCTTTTCTAGACTTAGCTGTGT TGTTTGTTTTTGTACCTTTATATGCTAAAGAGATTGCTTTGACTTTGAATTTGAAGTGCT TAATCATCAAGTTTA