Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0108600-02
CDS Infomation

cds chromosome:IRGSP-1.0:1:478488:481165:1 gene:Os01g0108600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Basic helix-loop-helix dimerisation region bHLH domain containing protein. (Os01t0108600-01);Hypothetical conserved gene. (Os01t0108600-02)
Sequence

ATGAAGAGCAGGAAGAACAGCACGACGAGCACAAAAGCAGCAGGCAGCTGCCACACCAGC
AGCAGCGGAGGAGGAGGAGGCGGCGGCAACTGCTATAGCAGCAGCAGTAGCAAGATGGAG
CGCAAGGATGTGGAGAAGAATCGGCGCCTCCACATGAAGGGTCTCTGCCTCAAGCTCTCC
TCCCTCATCCCCGCCGCCGCTCCCCGCCGCCATCACCACCACTACTCCACCTCCTCCTCC
TCATCGCCGCCCTCCTCCACCAAGGAGGCTGTGACGCAGCTGGATCACCTGGAGCAGGCG
GCGGCGTACATCAAGCAGCTCAAGGGGAGGATCGACGAGCTGAAGAAGAGGAAGCAGCAG
GCGGCGGCACTCACCACCAGCACCAGCAATGGCGGCGGCGGCGGGATGCCGGTGGTGGAG
GTGCGGTGCCAGGATGGGACGCTGGACGTGGTGGTGGTGAGCGAGGCGATCAGGGAGGAG
AGGGAGAGGGCGGTGCGGCTGCACGAGGTGATCGGCGTGCTGGAGGAAGAAGGCGCGGAG
GTGGTGAACGCCAGCTTCTCCGTCGTCGGCGACAAGATCTTCTACACTCTCCACTCCCAG
GCGCTCTGCTCCAGGATCGGCCTCGACGCCTCCAGGGTCTCCCACAGGCTGCGCAACCTC
CTCCTCCAATATTAA

Peptide Sequence

PEP ID

Os01t0108600-02
PEP Infomation

pep chromosome:IRGSP-1.0:1:478488:481165:1 gene:Os01g0108600 transcript:Os01t0108600-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Basic helix-loop-helix dimerisation region bHLH domain containing protein. (Os01t0108600-01);Hypothetical conserved gene. (Os01t0108600-02)
Sequence

MKSRKNSTTSTKAAGSCHTSSSGGGGGGGNCYSSSSSKMERKDVEKNRRLHMKGLCLKLS
SLIPAAAPRRHHHHYSTSSSSSPPSSTKEAVTQLDHLEQAAAYIKQLKGRIDELKKRKQQ
AAALTTSTSNGGGGGMPVVEVRCQDGTLDVVVVSEAIREERERAVRLHEVIGVLEEEGAE
VVNASFSVVGDKIFYTLHSQALCSRIGLDASRVSHRLRNLLLQY

Transcript Sequence

Transcript ID

Os01t0108600-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:478488:481165:1 gene:Os01g0108600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Basic helix-loop-helix dimerisation region bHLH domain containing protein. (Os01t0108600-01);Hypothetical conserved gene. (Os01t0108600-02)
Sequence

ACTCTTGCCTGCATCGATCCTTGAGTTTAATTAACTCAAGGAAGAAGCAATCTTCGCTTC
GGTGGATGAAGAGCAGGAAGAACAGCACGACGAGCACAAAAGCAGCAGGCAGCTGCCACA
CCAGCAGCAGCGGAGGAGGAGGAGGCGGCGGCAACTGCTATAGCAGCAGCAGTAGCAAGA
TGGAGCGCAAGGATGTGGAGAAGAATCGGCGCCTCCACATGAAGGGTCTCTGCCTCAAGC
TCTCCTCCCTCATCCCCGCCGCCGCTCCCCGCCGCCATCACCACCACTACTCCACCTCCT
CCTCCTCATCGCCGCCCTCCTCCACCAAGGAGGCTGTGACGCAGCTGGATCACCTGGAGC
AGGCGGCGGCGTACATCAAGCAGCTCAAGGGGAGGATCGACGAGCTGAAGAAGAGGAAGC
AGCAGGCGGCGGCACTCACCACCAGCACCAGCAATGGCGGCGGCGGCGGGATGCCGGTGG
TGGAGGTGCGGTGCCAGGATGGGACGCTGGACGTGGTGGTGGTGAGCGAGGCGATCAGGG
AGGAGAGGGAGAGGGCGGTGCGGCTGCACGAGGTGATCGGCGTGCTGGAGGAAGAAGGCG
CGGAGGTGGTGAACGCCAGCTTCTCCGTCGTCGGCGACAAGATCTTCTACACTCTCCACT
CCCAGGCGCTCTGCTCCAGGATCGGCCTCGACGCCTCCAGGGTCTCCCACAGGCTGCGCA
ACCTCCTCCTCCAATATTAATTCACACCACTCTTTCACTCTGCTCAGAATGAGATAATAC
TCTCTACTCTACTCTACTCTGTACTGTGATGATAAGAAGTATAAAGAGTAGCAGACCAGA
GAGCCTCTAGGTAGCTAGGTTAATTAGTGAGAAACAAGAGTTTACACTAAGCTAATGGAT
GGCATGAGCGGGAGCAAGCTGTTATTACTACTAACTCTTGGCTAACGTTTTTGTATCCCC
TAGCTAGCTGCCTGCCCTACGTATATGTCTCCAGTCTATCATGTAGGAGTACTCCAGTAG
TATACTGTGTGTGAGTGTTCTCTTTTGTGCCTGAAATTAATCCAGTCCGATGTAAGTACG
TACTAGTATTTGGTTTACTGCATGCTCTCTAGCCTCGCATCATTATTTTTGAGAGGCAAT
GATGTGATAATCCTTAAAATGGGGGCAGTCTCTTCTTAATTCT