Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0108400-00
CDS Infomation

cds chromosome:IRGSP-1.0:1:455707:457425:1 gene:Os01g0108400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Helix-loop-helix DNA-binding domain containing protein. (Os01t0108400-00)
Sequence

ATGGATCAGGAGAAGGCGGACGGCGGCGGCAGGAGGAGGAGGAGCAGGGCGACGAGTAGC
AGCGGCAGCGGCGCGAGCAGCACGGCGGCGGCGGCGGCGGCGGAGAGGAAGGAGATGGAG
CGCAGGAGGCGGCAGGACATGAAGGGCCTCTGCGTCAAGCTCGCCTCTCTCATCCCCAAA
GAACACTGCTCCATGTCCAAGGCGGCGTCTAGGACCCAGCTGGGCAGCCTGGACGAAGCG
GCGGCCTACATCAAGAAGCTCAAGGAAAGGGTGGACGAGCTGCACCACAAGAGGAGCATG
ATGAGTATCACATCATCGCGCTGCCGCTCAGGAGGAGGAGGAGGACCAGCTGCTGCTGCT
GGCCAGTCGACGAGCGGCGGCGGCGGCGGGGAAGAAGAAGAAGAAGATATGACGAGGACG
ACGGCGGCGGCGGCGGTGGTGGAGGTGCGGCAGCACGTGCAGGAGGGGTCGCTGATCAGC
TTGGACGTGGTGCTGATCTGCAGCGCAGCGAGGCCGGTCAAGTTCCACGACGTCATCACC
GTCCTCGAGGAAGAAGGCGCCGACATCATCTCCGCCAACTTCTCCCTCGCCGCCCACAAT
TTCTACTACACCATCTACTCCAGGGCCTTTAGCTCAAGAATTGGCATAGAGGCTTCGAGG
ATTTCTGAGAGACTACGGGCATTGGTATGA

Peptide Sequence

PEP ID

Os01t0108400-00
PEP Infomation

pep chromosome:IRGSP-1.0:1:455707:457425:1 gene:Os01g0108400 transcript:Os01t0108400-00 gene_biotype:protein_coding transcript_biotype:protein_coding description:Helix-loop-helix DNA-binding domain containing protein. (Os01t0108400-00)
Sequence

MDQEKADGGGRRRRSRATSSSGSGASSTAAAAAAERKEMERRRRQDMKGLCVKLASLIPK
EHCSMSKAASRTQLGSLDEAAAYIKKLKERVDELHHKRSMMSITSSRCRSGGGGGPAAAA
GQSTSGGGGGEEEEEDMTRTTAAAAVVEVRQHVQEGSLISLDVVLICSAARPVKFHDVIT
VLEEEGADIISANFSLAAHNFYYTIYSRAFSSRIGIEASRISERLRALV

Transcript Sequence

Transcript ID

Os01t0108400-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:455707:457425:1 gene:Os01g0108400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Helix-loop-helix DNA-binding domain containing protein. (Os01t0108400-00)
Sequence

ATGGATCAGGAGAAGGCGGACGGCGGCGGCAGGAGGAGGAGGAGCAGGGCGACGAGTAGC
AGCGGCAGCGGCGCGAGCAGCACGGCGGCGGCGGCGGCGGCGGAGAGGAAGGAGATGGAG
CGCAGGAGGCGGCAGGACATGAAGGGCCTCTGCGTCAAGCTCGCCTCTCTCATCCCCAAA
GAACACTGCTCCATGTCCAAGGCGGCGTCTAGGACCCAGCTGGGCAGCCTGGACGAAGCG
GCGGCCTACATCAAGAAGCTCAAGGAAAGGGTGGACGAGCTGCACCACAAGAGGAGCATG
ATGAGTATCACATCATCGCGCTGCCGCTCAGGAGGAGGAGGAGGACCAGCTGCTGCTGCT
GGCCAGTCGACGAGCGGCGGCGGCGGCGGGGAAGAAGAAGAAGAAGATATGACGAGGACG
ACGGCGGCGGCGGCGGTGGTGGAGGTGCGGCAGCACGTGCAGGAGGGGTCGCTGATCAGC
TTGGACGTGGTGCTGATCTGCAGCGCAGCGAGGCCGGTCAAGTTCCACGACGTCATCACC
GTCCTCGAGGAAGAAGGCGCCGACATCATCTCCGCCAACTTCTCCCTCGCCGCCCACAAT
TTCTACTACACCATCTACTCCAGGGCCTTTAGCTCAAGAATTGGCATAGAGGCTTCGAGG
ATTTCTGAGAGACTACGGGCATTGGTATGACACCTGAGGTACCAGATCATAACTGTATAT
ATATGTCTTCTACACATATATCATTCCATAAACATATATATGTGAATGTATT