Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0107900-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:416264:420497:-1 gene:Os01g0107900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:EX2 description:Protein of unknown function DUF3506 domain containing protein. (Os01t0107900-01);Protein of unknown function DUF3506 domain containing protein. (Os01t0107900-02)
Sequence	ATGTCCGCAGCCACCGCGTGCGCCTCGCCGGCGGCGGCGCGCCCGCCCCTCCACATCCCC CTCCGCTCGCCTCCTTCCGCCGCGCACCTTCCCTCCGCCGCCGCCTCCCGCCGGGCCTCC TCCGCCGCTTGCCGCTGCACCGCCTCCGCCTCCGCCTCCGCCTCGCCCTCCACCTGGGAT TGGACCCGCTGGACCCGCCACTTCGCCGACGTCGACCAGGCCGAGAGCTACGCCTCCCTC CTCAAGTTCCAGCTCGAGGAGGCCGTCGACAACGAGGACTTCGCGGAAGCCTCCAAGCTC AAGAAGGCCATACTCGAGGCCACGGGCAACGACGCCGTCGCCCAAGTCATGTCTGAACTC AAGACTGCTATAGAGGAACAGAGGTATCAGGACGCCTCAAGGTTGACAAAGCTTGCCAGA ACCAACTTGGTAGGTTGGTGGGTGGGGTACGCTAAGGATACCGATGATTCGATCGGGAGA ATCGTACGGATAAGCCCCGGTGTTGGGAGATATGTGGCTAAGAGCTTCAGCCCAAGGCAA TTGGTTACTGCATCGTCAGGAACTCCATTATTTGAAATTTTCCTTGTCAGAGATGACGAT GAGACATATACAATGAAGGTTGTACACATGCGACCAACAAAAGGCACTTCAAGTGCATCA TCCGTATCATCAGCAACTGCAGAAAGTCCAGCTAAGGAAGAGAATGAAAGCTCATTGGAA AGTAGTGCTATATCTGAGGGCATTACCGATGAAGCGAATACAGATACTACATTAAAGGGA GATGAAGATGTTGAGGATAAAGAACAAGATGTTGGTAACGCCAAGGATAGTAGTGTTGAA GGGTTGAAAAGCGTTCTGAATTTCTTCAAGTCTCGGATTCCTGAATTCAAAGTTCAAGTA ATAAATGTAGATGTGTCTGAGGAAGCTGAATTAGCTTCAGATTCGTCAGAAGAATTAGTG CAAGATGATGTGAAGAGCACGTCAGAGAACTCATTGGAAGATTCTACCACTGAGGAGCTT CAGCAGGATGATGTTCCAGATGGAGATTCAGACTCAGCTGAAGATAGTAAAAGTCCAGAA ATGAAGCTCTTCATTAGTGGAGTGGTTCATAACAAGGAGGATGCTGGAGCAAAATCATAT GTTCGAGTTCCAGCTGAAATCAATAATTTGGAAAAGGATTCCTTCGAACTTTACATTCCT GGAAAAGGTTCTGATCGAGATCTGGCTGATACAAAGGCTGCAAAACAGAAAGTTGCTGAT ATGGCTGCCAAATTGGCATCAGAACTTATGCCTTCTGATGTTGCGAAGGCATTATGGGGA ACGACCAAGAGTTCTTCGAAGATAAATAAAGAAGTACAAGAGCTCTTAAAGCTTACCCTC AGCAAGGCTCGAGTCAAGCTGACTGAGAATACAATTTTCAATAGGATCATTACTGACAGT AACGGCTCAGATCCATTTAGTGGTCTCTATGTGGGAGCATTTAGTCCATATGGACCAGAA GTTGTGCAGCTCCGTCGAAAGTTCGGCCATTGGAACAGCACAGATGAAGTGGAGTTTTTC GAGTATGTTGAAGCAGTAAAGTTGACTGGTGATCTGAGTGTCCCTGCTGGACAGATAACA TTCCGTGCTAAGATTGGGAAGGGCAAACGTCTTGAGAACCGTGGTGCATACCCTGAAGAA TTTGGTGTGATTGCTAGCTATAAAGGTCAAGGGAGAATTGCACAGCCTGGCTTCAAAAAT CCCCGGTGGGTGGATGGTGAGCTATTGGTGCTCAATGGCAAGAGCACGATCCCACACCTT GGAGGTGCGGAGCTTGGTTTCCTGTACAGCGTGCCTGAGCAGAGTTTCTTGGTACTCTTT GACCGGCTTAAACTTCCAGAGTGA

Peptide Sequence

PEP ID	Os01t0107900-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:416264:420497:-1 gene:Os01g0107900 transcript:Os01t0107900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:EX2 description:Protein of unknown function DUF3506 domain containing protein. (Os01t0107900-01);Protein of unknown function DUF3506 domain containing protein. (Os01t0107900-02)
Sequence	MSAATACASPAAARPPLHIPLRSPPSAAHLPSAAASRRASSAACRCTASASASASPSTWD WTRWTRHFADVDQAESYASLLKFQLEEAVDNEDFAEASKLKKAILEATGNDAVAQVMSEL KTAIEEQRYQDASRLTKLARTNLVGWWVGYAKDTDDSIGRIVRISPGVGRYVAKSFSPRQ LVTASSGTPLFEIFLVRDDDETYTMKVVHMRPTKGTSSASSVSSATAESPAKEENESSLE SSAISEGITDEANTDTTLKGDEDVEDKEQDVGNAKDSSVEGLKSVLNFFKSRIPEFKVQV INVDVSEEAELASDSSEELVQDDVKSTSENSLEDSTTEELQQDDVPDGDSDSAEDSKSPE MKLFISGVVHNKEDAGAKSYVRVPAEINNLEKDSFELYIPGKGSDRDLADTKAAKQKVAD MAAKLASELMPSDVAKALWGTTKSSSKINKEVQELLKLTLSKARVKLTENTIFNRIITDS NGSDPFSGLYVGAFSPYGPEVVQLRRKFGHWNSTDEVEFFEYVEAVKLTGDLSVPAGQIT FRAKIGKGKRLENRGAYPEEFGVIASYKGQGRIAQPGFKNPRWVDGELLVLNGKSTIPHL GGAELGFLYSVPEQSFLVLFDRLKLPE

Transcript Sequence

Transcript ID	Os01t0107900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:416264:420497:-1 gene:Os01g0107900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:EX2 description:Protein of unknown function DUF3506 domain containing protein. (Os01t0107900-01);Protein of unknown function DUF3506 domain containing protein. (Os01t0107900-02)
Sequence	GGGGCCCCAGTTGGCAGCCACTTATCTCATCGTAGCCCTTATCTTCCTCACGGGCTCACG CGCGGCGGGGAGAGAGAGGACGTCACCGATCGGCCATGTCCGCAGCCACCGCGTGCGCCT CGCCGGCGGCGGCGCGCCCGCCCCTCCACATCCCCCTCCGCTCGCCTCCTTCCGCCGCGC ACCTTCCCTCCGCCGCCGCCTCCCGCCGGGCCTCCTCCGCCGCTTGCCGCTGCACCGCCT CCGCCTCCGCCTCCGCCTCGCCCTCCACCTGGGATTGGACCCGCTGGACCCGCCACTTCG CCGACGTCGACCAGGCCGAGAGCTACGCCTCCCTCCTCAAGTTCCAGCTCGAGGAGGCCG TCGACAACGAGGACTTCGCGGAAGCCTCCAAGCTCAAGAAGGCCATACTCGAGGCCACGG GCAACGACGCCGTCGCCCAAGTCATGTCTGAACTCAAGACTGCTATAGAGGAACAGAGGT ATCAGGACGCCTCAAGGTTGACAAAGCTTGCCAGAACCAACTTGGTAGGTTGGTGGGTGG GGTACGCTAAGGATACCGATGATTCGATCGGGAGAATCGTACGGATAAGCCCCGGTGTTG GGAGATATGTGGCTAAGAGCTTCAGCCCAAGGCAATTGGTTACTGCATCGTCAGGAACTC CATTATTTGAAATTTTCCTTGTCAGAGATGACGATGAGACATATACAATGAAGGTTGTAC ACATGCGACCAACAAAAGGCACTTCAAGTGCATCATCCGTATCATCAGCAACTGCAGAAA GTCCAGCTAAGGAAGAGAATGAAAGCTCATTGGAAAGTAGTGCTATATCTGAGGGCATTA CCGATGAAGCGAATACAGATACTACATTAAAGGGAGATGAAGATGTTGAGGATAAAGAAC AAGATGTTGGTAACGCCAAGGATAGTAGTGTTGAAGGGTTGAAAAGCGTTCTGAATTTCT TCAAGTCTCGGATTCCTGAATTCAAAGTTCAAGTAATAAATGTAGATGTGTCTGAGGAAG CTGAATTAGCTTCAGATTCGTCAGAAGAATTAGTGCAAGATGATGTGAAGAGCACGTCAG AGAACTCATTGGAAGATTCTACCACTGAGGAGCTTCAGCAGGATGATGTTCCAGATGGAG ATTCAGACTCAGCTGAAGATAGTAAAAGTCCAGAAATGAAGCTCTTCATTAGTGGAGTGG TTCATAACAAGGAGGATGCTGGAGCAAAATCATATGTTCGAGTTCCAGCTGAAATCAATA ATTTGGAAAAGGATTCCTTCGAACTTTACATTCCTGGAAAAGGTTCTGATCGAGATCTGG CTGATACAAAGGCTGCAAAACAGAAAGTTGCTGATATGGCTGCCAAATTGGCATCAGAAC TTATGCCTTCTGATGTTGCGAAGGCATTATGGGGAACGACCAAGAGTTCTTCGAAGATAA ATAAAGAAGTACAAGAGCTCTTAAAGCTTACCCTCAGCAAGGCTCGAGTCAAGCTGACTG AGAATACAATTTTCAATAGGATCATTACTGACAGTAACGGCTCAGATCCATTTAGTGGTC TCTATGTGGGAGCATTTAGTCCATATGGACCAGAAGTTGTGCAGCTCCGTCGAAAGTTCG GCCATTGGAACAGCACAGATGAAGTGGAGTTTTTCGAGTATGTTGAAGCAGTAAAGTTGA CTGGTGATCTGAGTGTCCCTGCTGGACAGATAACATTCCGTGCTAAGATTGGGAAGGGCA AACGTCTTGAGAACCGTGGTGCATACCCTGAAGAATTTGGTGTGATTGCTAGCTATAAAG GTCAAGGGAGAATTGCACAGCCTGGCTTCAAAAATCCCCGGTGGGTGGATGGTGAGCTAT TGGTGCTCAATGGCAAGAGCACGATCCCACACCTTGGAGGTGCGGAGCTTGGTTTCCTGT ACAGCGTGCCTGAGCAGAGTTTCTTGGTACTCTTTGACCGGCTTAAACTTCCAGAGTGAT GAGATTATGCTGAATCGAGCTGTTCTCACATGCAAATTGCATGAGTACAGAGAGAAGCTG ACACAGTTTCAAGAGAAACGTATAGATGTCCCGTCATCTTCCTGAAATCCTGAGATGCCT CAGCTCCTTTATTAGTCAGCTCCTACTTGACAGGAGCTGACCTGTTTGAGCTTTTTCAGG GTATAAGAGAGCTGACTATTCTGGTCTAACTGAATACTGCTATTCTTGTCCAATGGAAAA CTGGAGCTTCATATGAGATCATGCTAGGCTCTTAGATGACGCGGTATAGATATAATTTGT GTGACAGTTTTGCATTCGGTTTTGCCTTAATAATGAAGGATGGGAAAGTTTTGTATTGTC TGGATGCTACAGATAAATAAAGCCTTATCTTTCAATACAGC