Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0105700-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:303233:306736:1 gene:Os01g0105700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 071 description:Basic helix-loop-helix dimerisation region bHLH domain containing protein. (Os01t0105700-01)
Sequence	ATGATGGCCTCCTCCTCTTCCTCCTCCAGCCTCTGTGATAATCATCTCTTGCAAGATGAC CTGATCCCATGGCCTTCCATGCCCTTTGCTCCTGCTCCCAACACCTTTGGATTGAACCAC CAATGGAGCCAGCCTCCAATGCTAAGCAGCAGTACTGATCAGTTAAGCTCATATGAGCTT GAATCACTCCAATCAGTTGAAAGTCAGCTGGCAGCTGCTGCTCCTCCGACATTAAGCCCC CATCTGCAGGCTCATCAACTCAGCACGGTGCTAATGATGCAGGAGCTAGGGTTCCAATGG AGCAGCTGCGCTGCGCCAGCAGATCAACATAGTATTGCAAGCTCCACGAATAATAATAGT AATGTGATGATGAACGAGGAGGAGCTACGGCCACGTCCTGATCAATCCCTAATCAGCAAT CCAAGGTCATGCAGCGCCACCACGCTTCTTCCTCCGCCGCATCTACATCTGGACGGCGCT GTGCTCCCGAGCATCAACGTCTCGCGGCTGCAGAAGCTGGCCGCCGGCGATGAGCCGCTG CAGATATGTTGCAAGAGGCAGGCTGCTGCTGCTGCAGTGGTCGGCCATAGCAGCATAAGA GATGAGCATGTGCCCTGCCCCTATGCTGGCCCTCCTGCTCATCTAATTCAAGGACCATCC AACACCCTGCAGATGAAGAGGAATACGAATGCAGCAGCTCAAGGGAGAGGTGGCCGCCAT GGGAGTTCAACGGAGCACAGATCATCAACAGCGCTGCCGCCATCGTCAAAGAAGCCCCGG CTCGAGTCACACTCCTCCTCAATGCTTCCTTCATTCAAGGTAAGGAAAGAGAAACTAGGG GATAGAATTGCCGCCCTTCAGCAACTGGTCTCACCCTTTGGTAAGACTGATACCGCATCG GTACTCATGGAGGCCATCGGTTACATCAAATTTCTTCAGGACCAAGTTGAGACTTTGAGC GGTCCATACCTGAGATCATCCAAGAACAGCAAGAAATTAGCCTGCAGGGCAGCACAACAA CAACGGAAGGGGACGTCAAATGGAGGGGACGCAGCAGCAAAGCTTGACCTCCGAAGTAGA GGACTCTGCCTGGTGCCCCTGTCGTGCACCTCCTACGTCACCAACGAGAATGGGGTTTGG CCTCCACCCAATTTCAGAGGAAACTGA

Peptide Sequence

PEP ID	Os01t0105700-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:303233:306736:1 gene:Os01g0105700 transcript:Os01t0105700-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 071 description:Basic helix-loop-helix dimerisation region bHLH domain containing protein. (Os01t0105700-01)
Sequence	MMASSSSSSSLCDNHLLQDDLIPWPSMPFAPAPNTFGLNHQWSQPPMLSSSTDQLSSYEL ESLQSVESQLAAAAPPTLSPHLQAHQLSTVLMMQELGFQWSSCAAPADQHSIASSTNNNS NVMMNEEELRPRPDQSLISNPRSCSATTLLPPPHLHLDGAVLPSINVSRLQKLAAGDEPL QICCKRQAAAAAVVGHSSIRDEHVPCPYAGPPAHLIQGPSNTLQMKRNTNAAAQGRGGRH GSSTEHRSSTALPPSSKKPRLESHSSSMLPSFKVRKEKLGDRIAALQQLVSPFGKTDTAS VLMEAIGYIKFLQDQVETLSGPYLRSSKNSKKLACRAAQQQRKGTSNGGDAAAKLDLRSR GLCLVPLSCTSYVTNENGVWPPPNFRGN

Transcript Sequence

Transcript ID	Os01t0105700-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:303233:306736:1 gene:Os01g0105700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 071 description:Basic helix-loop-helix dimerisation region bHLH domain containing protein. (Os01t0105700-01)
Sequence	CAATGTGTGCGTGTGTGGCCTATCTTTTCTTACTCTCTTGGAAGGAACATCAAATAAAAA GATCATCATCATTATAAACCTTTTAGTATCATCATCATGATGGCCTCCTCCTCTTCCTCC TCCAGCCTCTGTGATAATCATCTCTTGCAAGATGACCTGATCCCATGGCCTTCCATGCCC TTTGCTCCTGCTCCCAACACCTTTGGATTGAACCACCAATGGAGCCAGCCTCCAATGCTA AGCAGCAGTACTGATCAGTTAAGCTCATATGAGCTTGAATCACTCCAATCAGTTGAAAGT CAGCTGGCAGCTGCTGCTCCTCCGACATTAAGCCCCCATCTGCAGGCTCATCAACTCAGC ACGGTGCTAATGATGCAGGAGCTAGGGTTCCAATGGAGCAGCTGCGCTGCGCCAGCAGAT CAACATAGTATTGCAAGCTCCACGAATAATAATAGTAATGTGATGATGAACGAGGAGGAG CTACGGCCACGTCCTGATCAATCCCTAATCAGCAATCCAAGGTCATGCAGCGCCACCACG CTTCTTCCTCCGCCGCATCTACATCTGGACGGCGCTGTGCTCCCGAGCATCAACGTCTCG CGGCTGCAGAAGCTGGCCGCCGGCGATGAGCCGCTGCAGATATGTTGCAAGAGGCAGGCT GCTGCTGCTGCAGTGGTCGGCCATAGCAGCATAAGAGATGAGCATGTGCCCTGCCCCTAT GCTGGCCCTCCTGCTCATCTAATTCAAGGACCATCCAACACCCTGCAGATGAAGAGGAAT ACGAATGCAGCAGCTCAAGGGAGAGGTGGCCGCCATGGGAGTTCAACGGAGCACAGATCA TCAACAGCGCTGCCGCCATCGTCAAAGAAGCCCCGGCTCGAGTCACACTCCTCCTCAATG CTTCCTTCATTCAAGGTAAGGAAAGAGAAACTAGGGGATAGAATTGCCGCCCTTCAGCAA CTGGTCTCACCCTTTGGTAAGACTGATACCGCATCGGTACTCATGGAGGCCATCGGTTAC ATCAAATTTCTTCAGGACCAAGTTGAGACTTTGAGCGGTCCATACCTGAGATCATCCAAG AACAGCAAGAAATTAGCCTGCAGGGCAGCACAACAACAACGGAAGGGGACGTCAAATGGA GGGGACGCAGCAGCAAAGCTTGACCTCCGAAGTAGAGGACTCTGCCTGGTGCCCCTGTCG TGCACCTCCTACGTCACCAACGAGAATGGGGTTTGGCCTCCACCCAATTTCAGAGGAAAC TGAACTAATCTATCACAGATTCATACTACTAGCTAGGAGTACTATACAACAATGTCAGCT CATCTAGCTAGCTAGCTACAGCAGATCCAACACACAAAGTTGTACTACTCATCAAACTGA GCAACATTACTGGACTCGGCTGGAGGATCTCAGTATCCGATTCCTCTGCTTTTGTCTGGT GTGTATGTCTCCTCTTTGTTAAGAATTTGGTCTTTGCTCAGGCACACATCATATACTACA GCAGTC