Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0104600-02
CDS Infomation	cds chromosome:IRGSP-1.0:1:248828:256571:-1 gene:Os01g0104600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DE-ETIOLATED1 description:Homolog of Arabidopsis DE-ETIOLATED1 (DET1), Modulation of the ABA signaling pathway and ABA biosynthesis, Regulation of chlorophyll content (Os01t0104600-01);Similar to Light-mediated development protein DET1 (Deetiolated1 homolog) (tDET1) (High pigmentation protein 2) (Protein dark green). (Os01t0104600-02)
Sequence	ATGGCGACCTTCTTCCGCAGCGCCAACCTCGCCTCCAGGGTCTTCGACCGCCAGTTCCTC TCCCCACGCCCCGGCGCTACTGTTAACACTGTTAGACAGTTCTATGAGAACTTGGTTCCG AGTTACACTATATGTGACATAGATTGCCCAGATTATTCATTTCGTAAATTCACTGATGAT GGCAACTATCTTGTGGCTTTTAGCCGGAACCACCAAGATTTAATCGTGTACCGTCCCATC TGGCCAACATTTTCATGCAATGAGCCATGCGACTCTCATGATCTTCCACCCAAAGCAAAG AAATTCGACAGCTTCTTTAAGCAGCTCTACTCAATTTCACTTGCATCTAGCAATGAATAC ATCTGCAAGGACTTTTTCCTTTACATGGAGTGCCATCAGTTTGGCTTATTTGCCACATCA ACTGCACAAAGCAACGATTCAAGTGCCACTGAGGGTGCTATTCATGGGGTACCATCAATT GAGAAAATTACTTTCTATCTTGTCAGGCTAGACGATGGCGCAATACTAGATGAGAAAGCT TTCCGCAATGATTTTATCAATCTGGCTCATAGTATTGGAGCTTACTTGTATGAGGACCTG CTATGCATTGTCTCTCTTCGATATCAAACAATTCATGTCCTACAGATACGAGATTCAGGC AACCTTGTTGAAGTACGCAAAATTGGTGCATTTTGCCAGGAAGATGATGAGCTATTTCTC CATTCACATGGTCAGGCTGCACGAGGTGTTTCTTTTCTTCCTGGCATCAAGCAACGGTTG TTGTCATTTATTTTTCGCAAGACATGGAATGAGGAATCTGATCAGACCTTGAGAGTCCAG CATCTGAAGAAGAAGTTCTATTTTCACTTTCAAGACTATGTTGATCTTATCATATGGAAG GTGCAGTTTTTGGATCGTCATCACCTATTTATCAAGTTTGGTAGTGTGGATGGAGGGGTT TCTCGCAGCACTGAACAGAATTCAGCATTCTTTGCTGTGTACAACATGGAGACGACAGAT ATTGTTTCACTCTATCAGAATTCTTCGGAGGAGCTCTATTCATTGTTTGAATATTTTTAT GACCATTTTCACACAAATCCACAAAATTCATCGCATGGAAATTTTATCTCGTCACATTCC AATAATGTTCATGCTCTCGATCAACTTCGGACAATTAAAAATAAAGCAAACAGCACCTCA CAGTTTGTGAAAAAGATGATGGCGTCACTACCTTACACTTGTCAATCACAAAGTCCTTCG CCATACTTTGACCTATCATTGTTTCGGTATGATGAGAAGCTGATTTCAGCGATTGATCGG CACAGACACTGTACAGAGCATCCAATAAAATTTATATCAGTGAAACAGCCAAATGTTGTC AAATTCAAGATAAAACCAGGTTCAGATTCTGGTGCTTCTGACAGCAGGGCAAAAAGAATA TCTTCCTTCTTGTTTCACCCATTTTTCCCTCTCGCACTTTCTATTCAGCAGACATATATG CAGCCAACTGTTGTCAATTTACATTTCAGGAGATAG

Peptide Sequence

PEP ID	Os01t0104600-02
PEP Infomation	pep chromosome:IRGSP-1.0:1:248828:256571:-1 gene:Os01g0104600 transcript:Os01t0104600-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DE-ETIOLATED1 description:Homolog of Arabidopsis DE-ETIOLATED1 (DET1), Modulation of the ABA signaling pathway and ABA biosynthesis, Regulation of chlorophyll content (Os01t0104600-01);Similar to Light-mediated development protein DET1 (Deetiolated1 homolog) (tDET1) (High pigmentation protein 2) (Protein dark green). (Os01t0104600-02)
Sequence	MATFFRSANLASRVFDRQFLSPRPGATVNTVRQFYENLVPSYTICDIDCPDYSFRKFTDD GNYLVAFSRNHQDLIVYRPIWPTFSCNEPCDSHDLPPKAKKFDSFFKQLYSISLASSNEY ICKDFFLYMECHQFGLFATSTAQSNDSSATEGAIHGVPSIEKITFYLVRLDDGAILDEKA FRNDFINLAHSIGAYLYEDLLCIVSLRYQTIHVLQIRDSGNLVEVRKIGAFCQEDDELFL HSHGQAARGVSFLPGIKQRLLSFIFRKTWNEESDQTLRVQHLKKKFYFHFQDYVDLIIWK VQFLDRHHLFIKFGSVDGGVSRSTEQNSAFFAVYNMETTDIVSLYQNSSEELYSLFEYFY DHFHTNPQNSSHGNFISSHSNNVHALDQLRTIKNKANSTSQFVKKMMASLPYTCQSQSPS PYFDLSLFRYDEKLISAIDRHRHCTEHPIKFISVKQPNVVKFKIKPGSDSGASDSRAKRI SSFLFHPFFPLALSIQQTYMQPTVVNLHFRR

Transcript Sequence

Transcript ID	Os01t0104600-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:248828:256571:-1 gene:Os01g0104600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:DE-ETIOLATED1 description:Homolog of Arabidopsis DE-ETIOLATED1 (DET1), Modulation of the ABA signaling pathway and ABA biosynthesis, Regulation of chlorophyll content (Os01t0104600-01);Similar to Light-mediated development protein DET1 (Deetiolated1 homolog) (tDET1) (High pigmentation protein 2) (Protein dark green). (Os01t0104600-02)
Sequence	AGAGAGCAGACACCACCACACCATCCAACCAACCAAATTCCTCTCTCCTCCGCCGCGCCC GCGCCGCAGCAAGCAGGAGGGCCTCCGCCCGTGCGATGCCGGCGGCGGCTAGGCTACGGG CGGCCCGGTGATGGCGACCTTCTTCCGCAGCGCCAACCTCGCCTCCAGGGTCTTCGACCG CCAGTTCCTCTCCCCACGCCCCGGCGCTACTGTTAACACTGTTAGACAGTTCTATGAGAA CTTGGTTCCGAGTTACACTATATGTGACATAGATTGCCCAGATTATTCATTTCGTAAATT CACTGATGATGGCAACTATCTTGTGGCTTTTAGCCGGAACCACCAAGATTTAATCGTGTA CCGTCCCATCTGGCCAACATTTTCATGCAATGAGCCATGCGACTCTCATGATCTTCCACC CAAAGCAAAGAAATTCGACAGCTTCTTTAAGCAGCTCTACTCAATTTCACTTGCATCTAG CAATGAATACATCTGCAAGGACTTTTTCCTTTACATGGAGTGCCATCAGTTTGGCTTATT TGCCACATCAACTGCACAAAGCAACGATTCAAGTGCCACTGAGGGTGCTATTCATGGGGT ACCATCAATTGAGAAAATTACTTTCTATCTTGTCAGGCTAGACGATGGCGCAATACTAGA TGAGAAAGCTTTCCGCAATGATTTTATCAATCTGGCTCATAGTATTGGAGCTTACTTGTA TGAGGACCTGCTATGCATTGTCTCTCTTCGATATCAAACAATTCATGTCCTACAGATACG AGATTCAGGCAACCTTGTTGAAGTACGCAAAATTGGTGCATTTTGCCAGGAAGATGATGA GCTATTTCTCCATTCACATGGTCAGGCTGCACGAGGTGTTTCTTTTCTTCCTGGCATCAA GCAACGGTTGTTGTCATTTATTTTTCGCAAGACATGGAATGAGGAATCTGATCAGACCTT GAGAGTCCAGCATCTGAAGAAGAAGTTCTATTTTCACTTTCAAGACTATGTTGATCTTAT CATATGGAAGGTGCAGTTTTTGGATCGTCATCACCTATTTATCAAGTTTGGTAGTGTGGA TGGAGGGGTTTCTCGCAGCACTGAACAGAATTCAGCATTCTTTGCTGTGTACAACATGGA GACGACAGATATTGTTTCACTCTATCAGAATTCTTCGGAGGAGCTCTATTCATTGTTTGA ATATTTTTATGACCATTTTCACACAAATCCACAAAATTCATCGCATGGAAATTTTATCTC GTCACATTCCAATAATGTTCATGCTCTCGATCAACTTCGGACAATTAAAAATAAAGCAAA CAGCACCTCACAGTTTGTGAAAAAGATGATGGCGTCACTACCTTACACTTGTCAATCACA AAGTCCTTCGCCATACTTTGACCTATCATTGTTTCGGTATGATGAGAAGCTGATTTCAGC GATTGATCGGCACAGACACTGTACAGAGCATCCAATAAAATTTATATCAGTGAAACAGCC AAATGTTGTCAAATTCAAGATAAAACCAGGTTCAGATTCTGGTGCTTCTGACAGCAGGGC AAAAAGAATATCTTCCTTCTTGTTTCACCCATTTTTCCCTCTCGCACTTTCTATTCAGCA GACATATATGCAGCCAACTGTTGTCAATTTACATTTCAGGAGATAGAACGATATTGCCGT TCCCTCAATTGTATTTGTAACAGTTGTGAGCGGTGCACAGCTCAGTAAAAATTTTGGCCG CTTGTAGTAGGATGTTTTATCGGCAAAGATCTTATTATAGGCAAAGGAAAAATGTGGGTT TAGGTTCTC