Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0103100-02
CDS Infomation

cds chromosome:IRGSP-1.0:1:178652:180575:1 gene:Os01g0103100 gene_biotype:protein_coding transcript_biotype:protein_coding description:TGF-beta receptor, type I/II extracellular region family protein. (Os01t0103100-01);Similar to predicted protein. (Os01t0103100-02)
Sequence

ATGACTAGTACTAGTCCCCAGATGCAGATGAGGAGAAACAAGCTCTCCTCCCACTTCCAA
GGAGATATCGATGATGATGGTGGTGTTGGTGTTGTGGACATCCGGGGGTCGCCGATGGGG
TCGGCGGAGCTGGCGCGCACCGGCGGGTGGGTGGCGGCGGTCTTCATCTTCGGGAACGAG
ATGGCGGAGAGGATGGCCTACTACGGCCTGTCCCTCAACATGGTCATCTTCATGTTCAAC
GTCATGCACCGCCCCTTCGCCGCCTCCGCCAACGCCGTGAACAACTTCCTCGGCATCTCC
CAGGCCTCCTCCCTCCTCGGCGGCTTCCTCGCCGACGCCTACCTCGGGCGCTACTGGACC
ATCGCCGCCTTCACCACCCTCTATCTCCTGGGCCTCGTGGCCCTCACCCTCTGCGCCACC
ATGCCCGCCCTCCAGGCCCCGGGCCAGGACGAGTGCGACGGCTTCGCCAAGCTGCTGGGC
AAGTGCCAGCAGCCGCACCCCTGGCAGATGGCCTACCTCTACGCCGCGCTCTACACCACC
GCCTTGGGCGCCGCCGGGATCCGCCCCTGCGTCTCCTCCTTCGGGGCGGACCAGTTCGAG
GAGCGGAGCCCGGTGCTGGACCGCTTCTTCAACCTCTTCTACCTGGCCGTCACCGTGGGC
GCCATCGCGGCCTTCACGCTGCTGGTGTACGTGCAGAGGAACCACGGGTGGGCGGCGGCG
TTCGGGGCGCTGGCGCTGGCCATGGCCGCATCCAACGCGCTCTTCTTCATGGGGACGCCG
CTGTACCGCCACCGCGTGCCGGGGGGAAGCCCGCTGACGAGGGTGGCGCAGGTGCTAGTG
GCGGCCTACAGGAAGCGTCACATCAAGCACACCACGGAACTGTTGTACGAGGTGGGCGGG
GCCAAGTCGGCGGTGCGCGGGAGCGGCAAGATCGAGCACACGGAGGAGCTGAGGTGGCTG
GACAAGGCGGCGGTGAGGGTGGAGGGCCAAGAAGAAATCAATAACCCATGGCGTCTTTGC
ACTGTGACCCAGGTGGAGGAGGTGAAGATCCTGGTGCGGCTGGCGCCGGTGTCGGCGTGC
ACGGTGATGCTGAGCGTGGTGCTGACGGAGTTCCTGACGCTGTCGGTGCAGCAGGCGTAC
ACCCTCAACACCAGGGGCCTCCCCGTGGCGTGCATGCCCGTCTTCCCCTGCCTCGCCATC
CTCCTCCTCCTCGCCCTCTACTACAGGGCCTTCGCCCCGCTCGCCCGCCGCCTCACCGGC
CACCCGCACGGCGCCTCCCAGCTGCAGCGCCTCGGCCTCGGCCTCCTCCTCTCCACCCTC
TCCGTCGCTTGGGCTGGCCTCTTCGAGCGCTACCGCCGCGCCTACGCCATCCGCCATGGC
TTCCTCCCGCTCTTCCTCACTCCCATGCCGGGCCTCAGCGCCTACTGGCTCCTCATCCAG
TACTGCCTCATCGGTCTCGCCGAGGTCTTCTGCCTCGTCGCCCTCCTCGAGTTCCTCTAC
CAGGAGGCCCCCGACGCCATGCGCAGCCTCGCCTCCGCCTACGCCGCCCTCGCCGGCGGC
CTTGGCTGCTTCTTAGCCACCGCCATCAACACCGCCGTCGACTCCATCACCGGCGACATC
GACGCCGGACGCCCCTCCTGGCTCGCGCAGAACATCAACGTCGGCAAGTTCGACTACTTC
TACTGGCTCCTCGCCGTGCTCAGCACCATCAACCTCATCGTCTTCATCTACTTCGCCAAA
GCCTACAAGTACAGGATCAAGCCCCCCACCACCCCACATAACTAG

Peptide Sequence

PEP ID

Os01t0103100-02
PEP Infomation

pep chromosome:IRGSP-1.0:1:178652:180575:1 gene:Os01g0103100 transcript:Os01t0103100-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:TGF-beta receptor, type I/II extracellular region family protein. (Os01t0103100-01);Similar to predicted protein. (Os01t0103100-02)
Sequence

MTSTSPQMQMRRNKLSSHFQGDIDDDGGVGVVDIRGSPMGSAELARTGGWVAAVFIFGNE
MAERMAYYGLSLNMVIFMFNVMHRPFAASANAVNNFLGISQASSLLGGFLADAYLGRYWT
IAAFTTLYLLGLVALTLCATMPALQAPGQDECDGFAKLLGKCQQPHPWQMAYLYAALYTT
ALGAAGIRPCVSSFGADQFEERSPVLDRFFNLFYLAVTVGAIAAFTLLVYVQRNHGWAAA
FGALALAMAASNALFFMGTPLYRHRVPGGSPLTRVAQVLVAAYRKRHIKHTTELLYEVGG
AKSAVRGSGKIEHTEELRWLDKAAVRVEGQEEINNPWRLCTVTQVEEVKILVRLAPVSAC
TVMLSVVLTEFLTLSVQQAYTLNTRGLPVACMPVFPCLAILLLLALYYRAFAPLARRLTG
HPHGASQLQRLGLGLLLSTLSVAWAGLFERYRRAYAIRHGFLPLFLTPMPGLSAYWLLIQ
YCLIGLAEVFCLVALLEFLYQEAPDAMRSLASAYAALAGGLGCFLATAINTAVDSITGDI
DAGRPSWLAQNINVGKFDYFYWLLAVLSTINLIVFIYFAKAYKYRIKPPTTPHN

Transcript Sequence

Transcript ID

Os01t0103100-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:178652:180575:1 gene:Os01g0103100 gene_biotype:protein_coding transcript_biotype:protein_coding description:TGF-beta receptor, type I/II extracellular region family protein. (Os01t0103100-01);Similar to predicted protein. (Os01t0103100-02)
Sequence

ATCCAATTCCAGCAGATGAGAATGAGATGACTAGTACTAGTCCCCAGATGCAGATGAGGA
GAAACAAGCTCTCCTCCCACTTCCAAGGAGATATCGATGATGATGGTGGTGTTGGTGTTG
TGGACATCCGGGGGTCGCCGATGGGGTCGGCGGAGCTGGCGCGCACCGGCGGGTGGGTGG
CGGCGGTCTTCATCTTCGGGAACGAGATGGCGGAGAGGATGGCCTACTACGGCCTGTCCC
TCAACATGGTCATCTTCATGTTCAACGTCATGCACCGCCCCTTCGCCGCCTCCGCCAACG
CCGTGAACAACTTCCTCGGCATCTCCCAGGCCTCCTCCCTCCTCGGCGGCTTCCTCGCCG
ACGCCTACCTCGGGCGCTACTGGACCATCGCCGCCTTCACCACCCTCTATCTCCTGGGCC
TCGTGGCCCTCACCCTCTGCGCCACCATGCCCGCCCTCCAGGCCCCGGGCCAGGACGAGT
GCGACGGCTTCGCCAAGCTGCTGGGCAAGTGCCAGCAGCCGCACCCCTGGCAGATGGCCT
ACCTCTACGCCGCGCTCTACACCACCGCCTTGGGCGCCGCCGGGATCCGCCCCTGCGTCT
CCTCCTTCGGGGCGGACCAGTTCGAGGAGCGGAGCCCGGTGCTGGACCGCTTCTTCAACC
TCTTCTACCTGGCCGTCACCGTGGGCGCCATCGCGGCCTTCACGCTGCTGGTGTACGTGC
AGAGGAACCACGGGTGGGCGGCGGCGTTCGGGGCGCTGGCGCTGGCCATGGCCGCATCCA
ACGCGCTCTTCTTCATGGGGACGCCGCTGTACCGCCACCGCGTGCCGGGGGGAAGCCCGC
TGACGAGGGTGGCGCAGGTGCTAGTGGCGGCCTACAGGAAGCGTCACATCAAGCACACCA
CGGAACTGTTGTACGAGGTGGGCGGGGCCAAGTCGGCGGTGCGCGGGAGCGGCAAGATCG
AGCACACGGAGGAGCTGAGGTGGCTGGACAAGGCGGCGGTGAGGGTGGAGGGCCAAGAAG
AAATCAATAACCCATGGCGTCTTTGCACTGTGACCCAGGTGGAGGAGGTGAAGATCCTGG
TGCGGCTGGCGCCGGTGTCGGCGTGCACGGTGATGCTGAGCGTGGTGCTGACGGAGTTCC
TGACGCTGTCGGTGCAGCAGGCGTACACCCTCAACACCAGGGGCCTCCCCGTGGCGTGCA
TGCCCGTCTTCCCCTGCCTCGCCATCCTCCTCCTCCTCGCCCTCTACTACAGGGCCTTCG
CCCCGCTCGCCCGCCGCCTCACCGGCCACCCGCACGGCGCCTCCCAGCTGCAGCGCCTCG
GCCTCGGCCTCCTCCTCTCCACCCTCTCCGTCGCTTGGGCTGGCCTCTTCGAGCGCTACC
GCCGCGCCTACGCCATCCGCCATGGCTTCCTCCCGCTCTTCCTCACTCCCATGCCGGGCC
TCAGCGCCTACTGGCTCCTCATCCAGTACTGCCTCATCGGTCTCGCCGAGGTCTTCTGCC
TCGTCGCCCTCCTCGAGTTCCTCTACCAGGAGGCCCCCGACGCCATGCGCAGCCTCGCCT
CCGCCTACGCCGCCCTCGCCGGCGGCCTTGGCTGCTTCTTAGCCACCGCCATCAACACCG
CCGTCGACTCCATCACCGGCGACATCGACGCCGGACGCCCCTCCTGGCTCGCGCAGAACA
TCAACGTCGGCAAGTTCGACTACTTCTACTGGCTCCTCGCCGTGCTCAGCACCATCAACC
TCATCGTCTTCATCTACTTCGCCAAAGCCTACAAGTACAGGATCAAGCCCCCCACCACCC
CACATAACTAGTTCATAGTATTTCTACACCACTACAGTCTAGTACTAGTAGTATCTGCTA
AGTGACATTATATTGATCAATCAAACAAATTAAGGGCATCCAATATCTTCTTTTTTATTG
ATCT