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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0102900-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:169390:170316:-1 gene:Os01g0102900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:LIGHT-REGULATED GENE 1 description:Light-regulated protein, Regulation of light-dependent attachment of LEAF-TYPE FERREDOXIN-NADP+ OXIDOREDUCTASE (LFNR) to the thylakoid membrane (Os01t0102900-01)
Sequence

ATGCAGACCGCTGCTAGCAGTGTCGTTGGATTGTCGGCCGTGTTGCCCGCTGCTGTGAAG
GGGCGCAGCCTGCAGATTCAGGCTCCTCGCCGTGTTGCGTTGCGCGTTCGTGCGGCGGCG
GCGGCGGTGGCAGTGGAGGCTGCGGAGGTGGACTACAGCTCTAACATCTCGGTGTTTCCG
ATGGAGGCGTGCGACCTCATCGGCGGCGAGGCGTGCAACGTGCAGATGTACCCAGAGGCC
AAGCTCTCATCATCGGCTGCTGTTGCTGTTTCTCGTGCGGCGGCGGAGGAAGTCGACAGG
GACTACCTATCCTACGACGAGCCCACCACGGTGTTCCCCGAGGAGGCGTGCGACGATCTG
GGCGGAGAGTTCTGCAAGGCCACCTGA

Peptide Sequence

PEP ID

Os01t0102900-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:169390:170316:-1 gene:Os01g0102900 transcript:Os01t0102900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:LIGHT-REGULATED GENE 1 description:Light-regulated protein, Regulation of light-dependent attachment of LEAF-TYPE FERREDOXIN-NADP+ OXIDOREDUCTASE (LFNR) to the thylakoid membrane (Os01t0102900-01)
Sequence

MQTAASSVVGLSAVLPAAVKGRSLQIQAPRRVALRVRAAAAAVAVEAAEVDYSSNISVFP
MEACDLIGGEACNVQMYPEAKLSSSAAVAVSRAAAEEVDRDYLSYDEPTTVFPEEACDDL
GGEFCKAT

Transcript Sequence

Transcript ID

Os01t0102900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:169390:170316:-1 gene:Os01g0102900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:LIGHT-REGULATED GENE 1 description:Light-regulated protein, Regulation of light-dependent attachment of LEAF-TYPE FERREDOXIN-NADP+ OXIDOREDUCTASE (LFNR) to the thylakoid membrane (Os01t0102900-01)
Sequence

ATCTACCACCAAGCTAATTAAGCAAAAGAAGAAGAAGAAGAAAGAAGAAGAAGAAGATGC
AGACCGCTGCTAGCAGTGTCGTTGGATTGTCGGCCGTGTTGCCCGCTGCTGTGAAGGGGC
GCAGCCTGCAGATTCAGGCTCCTCGCCGTGTTGCGTTGCGCGTTCGTGCGGCGGCGGCGG
CGGTGGCAGTGGAGGCTGCGGAGGTGGACTACAGCTCTAACATCTCGGTGTTTCCGATGG
AGGCGTGCGACCTCATCGGCGGCGAGGCGTGCAACGTGCAGATGTACCCAGAGGCCAAGC
TCTCATCATCGGCTGCTGTTGCTGTTTCTCGTGCGGCGGCGGAGGAAGTCGACAGGGACT
ACCTATCCTACGACGAGCCCACCACGGTGTTCCCCGAGGAGGCGTGCGACGATCTGGGCG
GAGAGTTCTGCAAGGCCACCTGATCCCATTCCCATCCATGGAGAATTGGAGTCTTCTATC
ATCCTTCCTCCTCTGCTCCACTACCTTAATTCCATGTAGCTACAGATTTATATGTTAATC
ATCATGTAATGGTACATATCTCCTTGTTAATAAGGCACGCTAGTCTAGCTCCTCAAAATG
ATTTACAATAATATAATATTTACATACATATAATACACTTACTCCATCGAAC