Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0102800-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:152853:156449:1 gene:Os01g0102800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Cockayne syndrome WD-repeat protein description:Similar to chromatin remodeling complex subunit. (Os01t0102800-01)
Sequence

AAGCTAGATGCACCTGCTGCCCCATTTCAGAGACTTGGAAAACCCCTAAAGCGTCCTGTC
TCTCCCAGTTCAGATGAGCAGGAAAAGAAGAGACCAAGAAATAAGACCAAAAGACCACTG
CCTGGCAAGAAATGGAGGAAAGCAAACTCAATTAAGGAATCATCATTGGATGACAACGAT
GTTGGAGAGGCAGCTGTGTCAGTTTCAGATGATGATGAAGATCAAGTTACAGAAGGCTCT
GATGAGTTAACTGATGTTACCCTTGAAGGAGGTTTGAGAATTCCTGGCACACTTTACACG
CAACTATTTGACTACCAGAAAGTGGGAGTGCAGTGGCTATGGGAGTTGCATTGTCAAAGG
GCTGGTGGAATAATTGGAGATGAAATGGGCCTGGGAAAGACTGTGCAGGTCTTGTCATTT
CTTGGTTCCTTGCATAACAGTGGGCTCTACAAGCCTAGCATTGTTGTTTGTCCTGTAACC
CTTTTGCAACAGTGGCGAAGGGAGGCCAGTAGATGGTATCCAAAGTTCAAGGTTGAGATC
TTACATGACTCTGCAAACAGTTCATCTAAAAAGAGCAAGAGGTCTAGTGATTCTGACAGT
GAAGCTTCCTGGGATAGTGATCAGGAAGAAGCGGTTACATGTTCAAAACCTGCAAAGAAG
TGGGATGACTTGATTTCACGTGTTGTGAGTTCAGGATCAGGTTTGCTTCTGACCACATAT
GAGCAGTTAAGGATCCTAGGGGAGAAGTTGCTTGATATAGAATGGGGATATGCTGTATTG
GATGAGGGTCACCGCATTAGGAATCCTAATGCTGAGATTACTCTTGTGTGCAAGCAATTG
CAGACCGTGCACAGGATAATTATGACAGGTGCACCTATTCAAAACAAACTTTCGGAGCTT
TGGTCTCTCTTTGATTTTGTGTTCCCTGGAAAACTAGGTGTCCTGCCTGTGTTTGAGGCT
GAGTTTTCTGTTCCAATTACTGTTGGTGGGTACGCTAATGCAACACCATTGCAAGTGTCC
ACGGCGTATCGATGTGCTGTTGTCCTACGTGACCTGGTCATGCCGTACCTTCTTAGAAGA
ATGAAAGCTGATGTCAATGCACAGCTTCCCAAGAAAACAGAGCATGTTCTTTTCTGTAGT
CTAACTACTGAGCAACGTGCTACTTATCGTGCATTTCTTGCTAGTTCGGAGGTGGAACAA
ATCTTTGATGGTAACAGAAATTCCCTTTATGGGATAGATGTTCTAAGGAAGATATGCAAT
CATCCTGATCTACTTGAGAGAGAACATGCTGCTCAGAATCCTGACTATGGGAATCCTGAA
AGAAGTGGAAAGATGAAAGTGGTTGAGCAAGTTCTTAAAGTATGGAAAGAACAAGGTCAT
CGTGTTCTTCTTTTCACTCAGACACAACAAATGCTTGACATTATGGAGAACTTCTTGACA
GCTTGCGAATACCAATACCGAAGAATGGATGGACTTACACCTGCAAAGCAAAGAATGGCA
CTTATTGATGAATTCAATAACACAGATGAAATTTTTATTTTCATTCTGACCACGAAAGTT
GGTGGACTGGGTACGAATTTGACTGGTGCAAACCGGATTATTATATATGATCCTGACTGG
AATCCTTCAACTGACATGCAGGCTAGGGAACGTGCATGGCGAATTGGGCAAACTAGAGAT
GTGACAGTTTATAGACTGATCACGCGTGGGACAATAGAGGAGAAAGTCTACCATCGTCAG
ATATACAAGCATTTCCTCACAAACAAAGTACTGAAAGACCCTCAGCAGAGGCGGTTTTTT
AAAGCCAGAGACATGAAGGATTTGTTTACGCTGCAAGATGATGACAATAATGGCTCAACT
GAAACATCAAATATTTTCAGCCAATTGTCTGAGGATGTGAATATCGGAGTTCCGAGTGAC
AAGCAACAAGACCAGCTATATGCAGCCTCTGCTACACCGACAACCTCTGGGACTGAACCG
AGCTCATCCAGGCATGGACAGGGTAAAGAAGACCATTGCCCTGACCAAGCAGATGAAGAA
TGCAACATTTTGAAGAGCCTTTTTGATGCTCAAGGCATTCATAGTGCGATCAATCATGAT
GCCATAATGAACGCTAATGATGACCAGAAGCTGCGCCTAGAAGCAGAAGCTACACAGGTG
GCACAAAGGGCAGCTGAAGCTTTACGCCAATCACGGATGCTCAGAAGTCATGAAAGTTTT
TCTGTTCCTACATGGACTGGAAGAGCTGGTGCTGCGGGGGCACCATCCTCTGTCCGCAGG
AAGTTTGGGTCAACACTCAATACCCAGTTGGTTAATTCTTCTCAGCCATCAGAAACTTCA
AATGGCAGGGGCCAAAGTCTTCAGGTGGGTGCTCTAAATGGCAAAGCACTGTCCTCCGCT
GAGCTTCTGGCCAGGATACGTGGAACCCGAGAGGGAGCAGCTTCAGATGCACTAGAACAT
CAACTCAACCTGGGATCAGCTTCCAATCACACATCGAGTTCATCAGGGAATGGCCGTGCA
TCAAGCTCTTCTACTAGGAGCATGATCGTACAGCCTGAAGTCCTAATCCGCCAATTGTGC
ACCTTCATACAGCAGCATGGTGGTTCCGCCAGCTCAACAAGTATAACTGAACACTTCAAG
AACCGGATACTGTCCAAGGATATGCTGCTGTTTAAGAATCTGCTGAAGGAAATAGCTACG
TTGCAAAGAGGTGCAAATGGTGCAACGTGGGTGCTGAAACCTGACTACCAGTAA

Peptide Sequence

PEP ID

Os01t0102800-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:152853:156449:1 gene:Os01g0102800 transcript:Os01t0102800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Cockayne syndrome WD-repeat protein description:Similar to chromatin remodeling complex subunit. (Os01t0102800-01)
Sequence

KLDAPAAPFQRLGKPLKRPVSPSSDEQEKKRPRNKTKRPLPGKKWRKANSIKESSLDDND
VGEAAVSVSDDDEDQVTEGSDELTDVTLEGGLRIPGTLYTQLFDYQKVGVQWLWELHCQR
AGGIIGDEMGLGKTVQVLSFLGSLHNSGLYKPSIVVCPVTLLQQWRREASRWYPKFKVEI
LHDSANSSSKKSKRSSDSDSEASWDSDQEEAVTCSKPAKKWDDLISRVVSSGSGLLLTTY
EQLRILGEKLLDIEWGYAVLDEGHRIRNPNAEITLVCKQLQTVHRIIMTGAPIQNKLSEL
WSLFDFVFPGKLGVLPVFEAEFSVPITVGGYANATPLQVSTAYRCAVVLRDLVMPYLLRR
MKADVNAQLPKKTEHVLFCSLTTEQRATYRAFLASSEVEQIFDGNRNSLYGIDVLRKICN
HPDLLEREHAAQNPDYGNPERSGKMKVVEQVLKVWKEQGHRVLLFTQTQQMLDIMENFLT
ACEYQYRRMDGLTPAKQRMALIDEFNNTDEIFIFILTTKVGGLGTNLTGANRIIIYDPDW
NPSTDMQARERAWRIGQTRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKVLKDPQQRRFF
KARDMKDLFTLQDDDNNGSTETSNIFSQLSEDVNIGVPSDKQQDQLYAASATPTTSGTEP
SSSRHGQGKEDHCPDQADEECNILKSLFDAQGIHSAINHDAIMNANDDQKLRLEAEATQV
AQRAAEALRQSRMLRSHESFSVPTWTGRAGAAGAPSSVRRKFGSTLNTQLVNSSQPSETS
NGRGQSLQVGALNGKALSSAELLARIRGTREGAASDALEHQLNLGSASNHTSSSSGNGRA
SSSSTRSMIVQPEVLIRQLCTFIQQHGGSASSTSITEHFKNRILSKDMLLFKNLLKEIAT
LQRGANGATWVLKPDYQ

Transcript Sequence

Transcript ID

Os01t0102800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:152853:156449:1 gene:Os01g0102800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Cockayne syndrome WD-repeat protein description:Similar to chromatin remodeling complex subunit. (Os01t0102800-01)
Sequence

TAAGCTAGATGCACCTGCTGCCCCATTTCAGAGACTTGGAAAACCCCTAAAGCGTCCTGT
CTCTCCCAGTTCAGATGAGCAGGAAAAGAAGAGACCAAGAAATAAGACCAAAAGACCACT
GCCTGGCAAGAAATGGAGGAAAGCAAACTCAATTAAGGAATCATCATTGGATGACAACGA
TGTTGGAGAGGCAGCTGTGTCAGTTTCAGATGATGATGAAGATCAAGTTACAGAAGGCTC
TGATGAGTTAACTGATGTTACCCTTGAAGGAGGTTTGAGAATTCCTGGCACACTTTACAC
GCAACTATTTGACTACCAGAAAGTGGGAGTGCAGTGGCTATGGGAGTTGCATTGTCAAAG
GGCTGGTGGAATAATTGGAGATGAAATGGGCCTGGGAAAGACTGTGCAGGTCTTGTCATT
TCTTGGTTCCTTGCATAACAGTGGGCTCTACAAGCCTAGCATTGTTGTTTGTCCTGTAAC
CCTTTTGCAACAGTGGCGAAGGGAGGCCAGTAGATGGTATCCAAAGTTCAAGGTTGAGAT
CTTACATGACTCTGCAAACAGTTCATCTAAAAAGAGCAAGAGGTCTAGTGATTCTGACAG
TGAAGCTTCCTGGGATAGTGATCAGGAAGAAGCGGTTACATGTTCAAAACCTGCAAAGAA
GTGGGATGACTTGATTTCACGTGTTGTGAGTTCAGGATCAGGTTTGCTTCTGACCACATA
TGAGCAGTTAAGGATCCTAGGGGAGAAGTTGCTTGATATAGAATGGGGATATGCTGTATT
GGATGAGGGTCACCGCATTAGGAATCCTAATGCTGAGATTACTCTTGTGTGCAAGCAATT
GCAGACCGTGCACAGGATAATTATGACAGGTGCACCTATTCAAAACAAACTTTCGGAGCT
TTGGTCTCTCTTTGATTTTGTGTTCCCTGGAAAACTAGGTGTCCTGCCTGTGTTTGAGGC
TGAGTTTTCTGTTCCAATTACTGTTGGTGGGTACGCTAATGCAACACCATTGCAAGTGTC
CACGGCGTATCGATGTGCTGTTGTCCTACGTGACCTGGTCATGCCGTACCTTCTTAGAAG
AATGAAAGCTGATGTCAATGCACAGCTTCCCAAGAAAACAGAGCATGTTCTTTTCTGTAG
TCTAACTACTGAGCAACGTGCTACTTATCGTGCATTTCTTGCTAGTTCGGAGGTGGAACA
AATCTTTGATGGTAACAGAAATTCCCTTTATGGGATAGATGTTCTAAGGAAGATATGCAA
TCATCCTGATCTACTTGAGAGAGAACATGCTGCTCAGAATCCTGACTATGGGAATCCTGA
AAGAAGTGGAAAGATGAAAGTGGTTGAGCAAGTTCTTAAAGTATGGAAAGAACAAGGTCA
TCGTGTTCTTCTTTTCACTCAGACACAACAAATGCTTGACATTATGGAGAACTTCTTGAC
AGCTTGCGAATACCAATACCGAAGAATGGATGGACTTACACCTGCAAAGCAAAGAATGGC
ACTTATTGATGAATTCAATAACACAGATGAAATTTTTATTTTCATTCTGACCACGAAAGT
TGGTGGACTGGGTACGAATTTGACTGGTGCAAACCGGATTATTATATATGATCCTGACTG
GAATCCTTCAACTGACATGCAGGCTAGGGAACGTGCATGGCGAATTGGGCAAACTAGAGA
TGTGACAGTTTATAGACTGATCACGCGTGGGACAATAGAGGAGAAAGTCTACCATCGTCA
GATATACAAGCATTTCCTCACAAACAAAGTACTGAAAGACCCTCAGCAGAGGCGGTTTTT
TAAAGCCAGAGACATGAAGGATTTGTTTACGCTGCAAGATGATGACAATAATGGCTCAAC
TGAAACATCAAATATTTTCAGCCAATTGTCTGAGGATGTGAATATCGGAGTTCCGAGTGA
CAAGCAACAAGACCAGCTATATGCAGCCTCTGCTACACCGACAACCTCTGGGACTGAACC
GAGCTCATCCAGGCATGGACAGGGTAAAGAAGACCATTGCCCTGACCAAGCAGATGAAGA
ATGCAACATTTTGAAGAGCCTTTTTGATGCTCAAGGCATTCATAGTGCGATCAATCATGA
TGCCATAATGAACGCTAATGATGACCAGAAGCTGCGCCTAGAAGCAGAAGCTACACAGGT
GGCACAAAGGGCAGCTGAAGCTTTACGCCAATCACGGATGCTCAGAAGTCATGAAAGTTT
TTCTGTTCCTACATGGACTGGAAGAGCTGGTGCTGCGGGGGCACCATCCTCTGTCCGCAG
GAAGTTTGGGTCAACACTCAATACCCAGTTGGTTAATTCTTCTCAGCCATCAGAAACTTC
AAATGGCAGGGGCCAAAGTCTTCAGGTGGGTGCTCTAAATGGCAAAGCACTGTCCTCCGC
TGAGCTTCTGGCCAGGATACGTGGAACCCGAGAGGGAGCAGCTTCAGATGCACTAGAACA
TCAACTCAACCTGGGATCAGCTTCCAATCACACATCGAGTTCATCAGGGAATGGCCGTGC
ATCAAGCTCTTCTACTAGGAGCATGATCGTACAGCCTGAAGTCCTAATCCGCCAATTGTG
CACCTTCATACAGCAGCATGGTGGTTCCGCCAGCTCAACAAGTATAACTGAACACTTCAA
GAACCGGATACTGTCCAAGGATATGCTGCTGTTTAAGAATCTGCTGAAGGAAATAGCTAC
GTTGCAAAGAGGTGCAAATGGTGCAACGTGGGTGCTGAAACCTGACTACCAGTAATATTA
GCTATAGCTGCAAAGTTTTGGCTAGGTGTAGCGAACAGCATAAATTAATTTCATTCAGAT
TGGAGATGCAAAAATCGATGAGGGAAATGCCTCTAATGCCTTTTTGATGAAGACTGAATT
CTTTTTGTAGGCAATATACAACTTTTGTAGGGTAGATATACAAATCTGAAACAAAAACAT
GTAGGTGACAGGTTGTAAATGCATGAATACAGACATTTGTCGCTGGAAGC