Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0102700-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:148085:150568:1 gene:Os01g0102700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Translocon-associated beta family protein. (Os01t0102700-01)
Sequence

ATGGCGATGGCGCGATCCATCCTCCTCCTCCTCCTCCTCGCCGCCGCCGCCTCCGCCTCC
GCCGACGCGCCCTTCCTCGTCGCGCACAAGAAGGTTTCGCTCTCCCGCCCCAAGCCTGGC
GTCGAGCGCCTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCAACTGCCTATGAT
GTGAGCATTAATGATGATACTTGGCCAAAGGAGGCATTTGAGCTTGTCTCTGGAGAGATG
TCAAAGACATTGGAAAGGCTTGACCCTGGTGTCACTGCTTCGCATGCATTTGTCTTGGAG
ACCAAAGTACAGGGCAGGTTTCAAGGTTCACCTGCGGTTATTACCTATCGTGTTCCCACA
AAGGCTGCGCTTCAGGAGGCCTATTCAACCCCCATCCTTGCACTTGATGTTCTTGCTGAG
AGGCCTCCAGAAAAGAAGTTTGAATGGGTAAAGGCTTGTGGCGAAGTACGGGTCGCTGGT
GTCCGTTGTTGGCTTGGTTGGAGTGTTTATCTACCTGGTTGCAAGCCCGTCAAAATCCAG
CGGTGCAAAAGCAAGCAAGAAGAGGCGTTGATATACTTGCCTACCATATATAAGGCAGTG
TTTGTTCTTTTTTATTAA

Peptide Sequence

PEP ID

Os01t0102700-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:148085:150568:1 gene:Os01g0102700 transcript:Os01t0102700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Translocon-associated beta family protein. (Os01t0102700-01)
Sequence

MAMARSILLLLLLAAAASASADAPFLVAHKKVSLSRPKPGVERLAVSLDLYNQGSATAYD
VSINDDTWPKEAFELVSGEMSKTLERLDPGVTASHAFVLETKVQGRFQGSPAVITYRVPT
KAALQEAYSTPILALDVLAERPPEKKFEWVKACGEVRVAGVRCWLGWSVYLPGCKPVKIQ
RCKSKQEEALIYLPTIYKAVFVLFY

Transcript Sequence

Transcript ID

Os01t0102700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:148085:150568:1 gene:Os01g0102700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Translocon-associated beta family protein. (Os01t0102700-01)
Sequence

GAAGCAAGAGGAAGGGCATCCAGAATCAGATCCACAAGGCAGCAGCTGCAGCAGCATCGA
CCATGGCGATGGCGCGATCCATCCTCCTCCTCCTCCTCCTCGCCGCCGCCGCCTCCGCCT
CCGCCGACGCGCCCTTCCTCGTCGCGCACAAGAAGGTTTCGCTCTCCCGCCCCAAGCCTG
GCGTCGAGCGCCTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCAACTGCCTATG
ATGTGAGCATTAATGATGATACTTGGCCAAAGGAGGCATTTGAGCTTGTCTCTGGAGAGA
TGTCAAAGACATTGGAAAGGCTTGACCCTGGTGTCACTGCTTCGCATGCATTTGTCTTGG
AGACCAAAGTACAGGGCAGGTTTCAAGGTTCACCTGCGGTTATTACCTATCGTGTTCCCA
CAAAGGCTGCGCTTCAGGAGGCCTATTCAACCCCCATCCTTGCACTTGATGTTCTTGCTG
AGAGGCCTCCAGAAAAGAAGTTTGAATGGGTAAAGGCTTGTGGCGAAGTACGGGTCGCTG
GTGTCCGTTGTTGGCTTGGTTGGAGTGTTTATCTACCTGGTTGCAAGCCCGTCAAAATCC
AGCGGTGCAAAAGCAAGCAAGAAGAGGCGTTGATATACTTGCCTACCATATATAAGGCAG
TGTTTGTTCTTTTTTATTAAAAAGAGGAAGAGATGGTGGCAGGTTTTTTAGATTGATAGC
GCGAGAGCTTTAAGGCTGCCGCATCCTTGAACTGTATGAATTTTCTCTGTTTGTGTTTTT
GGAAGTTGAAAACCTAACCCAGAGAATTGGAGAGTAGATTTTGTAACAGATGAAATCTCA
ATGCATCATTTTGAAGTTGCCTGATACAGATACCTATTCATTGCATTTGGTAACAGATGA
AATCTCAATGCATCATTTTGAAGTTGCCTG