Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0102500-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:141959:144554:1 gene:Os01g0102500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os01t0102500-01)
Sequence

ATGGGCAAGCTCCTCTGCGACTCCTCCTCCGCCGCCGTCGCCGTCGCCGAGGCACCTTCC
CCTGCCCCTGCGCCCCCGCTCCTCACCTGGCCCACCCCCGACCCCGACCCCCCGACCAGC
TGGACCGCCGTCGCCGCGCTCGAGGACCAGCAGCGCCGCCGCCTCCACCGGATCTGGGAG
CGCGGCGTCGCCTGGAAGCCCCCCGCCACGCTCCCGCTCCCGCCCCTCGTCTTCCGCCTT
GACCACGCCGGGGAGGTCGACGCCGACGGCAACTGCCTCTTCACCGCCGCCCGCAAGGCC
GCCTCCGCCAAGCCCGACGCGCGCGACCTCAGGCACCGCATCGTCCGCCGCTTCTCCCAC
CTCTACGCCGCCGCCCAAGCCCCCGACAGAGACGCCATCGATGCGGCCGTGCGCCACCTC
TACGCGCCGGATCTCAAGGCCGGCTGGGGCGTCCACGTCGTGCAGGAGCTCAAGTTGCTC
GCGCCCAAGACCCTGCGCCACCACCTCGACGCTGCCATCAACGACCTCGTCGACCTCGGC
ATCCAAAGGGAAATGGCAGCTGAAACCATATACAGGGAGAGATGCATAGCTGTAAACAAT
GGAGATAGTTGGGCCAAGTACATGTCTGTCTCTGGTTCCGCAGAGGACGAGCACAACATA
ATCACTCTGCAGTACACAGAGGAAGGCTTACTGACCATCGATGAGAACCGGGATGGCCAT
GCTGCAGCTTTTGGTGATGATATTGCTATCGAGTGCCTGGCAACCGAGTTCAAGAGAGAA
GTTTATGTGGTGCAAGCACATGGAGCGGATGCAATGGTTGATGAGGACAACTGTGTGTTC
TTCCTACCACACCGCCCTAGAGGAGAAATTTGCGAGCCGCCGATTTTTCTTTTCATGAAG
GGAACAGCATGGTGTGGTGCTGGTGCCGACCATTATGAGCCTTTGATAGCCACTGTCCTC
CAGAATGTTACTCCAGACAAGGCAGCTGTTGTACTTTGA

Peptide Sequence

PEP ID

Os01t0102500-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:141959:144554:1 gene:Os01g0102500 transcript:Os01t0102500-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os01t0102500-01)
Sequence

MGKLLCDSSSAAVAVAEAPSPAPAPPLLTWPTPDPDPPTSWTAVAALEDQQRRRLHRIWE
RGVAWKPPATLPLPPLVFRLDHAGEVDADGNCLFTAARKAASAKPDARDLRHRIVRRFSH
LYAAAQAPDRDAIDAAVRHLYAPDLKAGWGVHVVQELKLLAPKTLRHHLDAAINDLVDLG
IQREMAAETIYRERCIAVNNGDSWAKYMSVSGSAEDEHNIITLQYTEEGLLTIDENRDGH
AAAFGDDIAIECLATEFKREVYVVQAHGADAMVDEDNCVFFLPHRPRGEICEPPIFLFMK
GTAWCGAGADHYEPLIATVLQNVTPDKAAVVL

Transcript Sequence

Transcript ID

Os01t0102500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:141959:144554:1 gene:Os01g0102500 gene_biotype:protein_coding transcript_biotype:protein_coding description:Conserved hypothetical protein. (Os01t0102500-01)
Sequence

GTCTCGCTCGGCGCTCGTCTTTCTCCCCTCCATTCCATTTTTCCTTCTCCTCTTCAACCA
AACGAAACCCTAGCCGCCTCCTATAGCTAAGCTAAGCTCCCTCCCCTCCTCCCTCTCATC
CATCAATGGGCAAGCTCCTCTGCGACTCCTCCTCCGCCGCCGTCGCCGTCGCCGAGGCAC
CTTCCCCTGCCCCTGCGCCCCCGCTCCTCACCTGGCCCACCCCCGACCCCGACCCCCCGA
CCAGCTGGACCGCCGTCGCCGCGCTCGAGGACCAGCAGCGCCGCCGCCTCCACCGGATCT
GGGAGCGCGGCGTCGCCTGGAAGCCCCCCGCCACGCTCCCGCTCCCGCCCCTCGTCTTCC
GCCTTGACCACGCCGGGGAGGTCGACGCCGACGGCAACTGCCTCTTCACCGCCGCCCGCA
AGGCCGCCTCCGCCAAGCCCGACGCGCGCGACCTCAGGCACCGCATCGTCCGCCGCTTCT
CCCACCTCTACGCCGCCGCCCAAGCCCCCGACAGAGACGCCATCGATGCGGCCGTGCGCC
ACCTCTACGCGCCGGATCTCAAGGCCGGCTGGGGCGTCCACGTCGTGCAGGAGCTCAAGT
TGCTCGCGCCCAAGACCCTGCGCCACCACCTCGACGCTGCCATCAACGACCTCGTCGACC
TCGGCATCCAAAGGGAAATGGCAGCTGAAACCATATACAGGGAGAGATGCATAGCTGTAA
ACAATGGAGATAGTTGGGCCAAGTACATGTCTGTCTCTGGTTCCGCAGAGGACGAGCACA
ACATAATCACTCTGCAGTACACAGAGGAAGGCTTACTGACCATCGATGAGAACCGGGATG
GCCATGCTGCAGCTTTTGGTGATGATATTGCTATCGAGTGCCTGGCAACCGAGTTCAAGA
GAGAAGTTTATGTGGTGCAAGCACATGGAGCGGATGCAATGGTTGATGAGGACAACTGTG
TGTTCTTCCTACCACACCGCCCTAGAGGAGAAATTTGCGAGCCGCCGATTTTTCTTTTCA
TGAAGGGAACAGCATGGTGTGGTGCTGGTGCCGACCATTATGAGCCTTTGATAGCCACTG
TCCTCCAGAATGTTACTCCAGACAAGGCAGCTGTTGTACTTTGAGGATGACTTCCTTCTT
TTTCGCTCCCCCAGTTCTAGTCACTGATGGAGTCGAGCCAATTTTGTAATCTGAGCTAGA
TTGCTTTATTGAGGAGCAACGTCTATGCCCAAGAGGATCTAACTGTGCGCCGCAGGGTCT
TGCCTGCTTCTGAAGTTGTGTACTATGATTCGTTTTGTATGCTGATTTGATTAGTGTGTG
TTTTGATAGGTTCTGACTGTTGAGGAGGAGATTCAGAGTGTGGTAGAATATCGGATCTAG
TTTATGCTGTGAATTGTTGTGCGGCATTGTAAACCGGCATTTTGGTATTGCCTCATGCCT
ATTGTGAGGTTTTTTTTTTTTTTGGTTGCTTGCGTTCTAGGGACATGATTGGACATTTGA
GAATGAGGATCATTCTTTTCAGTTTTGGGCTACCCGTTGTTCCAGTCCTTGCTGTTGCCA
CAATCTGACTGGAGCGGGGATGAATTGATTTGCAAAAGAGATGTAATACTTGTTTTCTCA
TGCAAATTGTACCAACATTGCAGAGGGATATGGCTGCTGTAAAAGTCTCTTCTTTCCTTT
GCAAAAATAGGATCATCCTTCGTTGTATTTATAGCTTTGAACTCATTTCATGCATGAGGA
AACCATGAAAGAACGCTACTTAAGCTCGTG