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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os01t0102300-01
CDS Infomation

cds chromosome:IRGSP-1.0:1:134300:135439:1 gene:Os01g0102300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsTLP27 description:Thylakoid lumen protein, Photosynthesis and chloroplast development (Os01t0102300-01)
Sequence

ATGACGTCATCATTATCATCATCCACAGCCTCTGCTGCTGCTTGTTGCAAGAGTAGAAGT
CGTAATCCTCCTCCGGCGCCGGCGCCACACACTAGTACTGCACGAGTAGTTCGCAGCAGC
AGGCGGAGGCTTCTCTTAGTATTCTTCTCCGCAGAGGCGGCGGCGGCTGCGACGAGCGGT
CTCATCCAGACCCCGTGTGGGCAAGCCTACCCTTTCGCTGGCACCAACGTGAAGAAGCCG
CAGCCGCCGTCCACCCCTTACTCCCAATCCCAATCGCAGCAGCAGTTTGGCCTCGACGCC
AAAGGGAGGATTAGGGCGTGCCCGTCGACGAACCCCGGATGCGTGTCCACAAACCCCACG
GTGGGCGCATCTTGCTCCTTGGCCTCCCCGCTCATCGTCCCCGCTAATACACCAACGGAC
AAGGCCGCCGCTTCGCTGCGCGAGGCTATCCTCAAGACGCAGAGGAATGCGGTGATCAAA
GCCGACGAGGAGACGGCGTACGGGCACTACATCCAGGCGGAGGTCGACGGCGGCGCAGGC
CGCGACGTGATGGAGTTCCTCCTCAAGGAATCCCAGTCCCAGTCCCAGGAGGTGGTGGCC
GCGTACCGATGCGTCGCCACCAAGGTCATCTTCGTCTACCCCTTCACCACTGCCGTCGGC
GATTCAAGAGGGCAGAGCCAGAGGATCGCCGCCGTCGCCCAGGAGCTCGGATGGTACGCC
CCGGACCTACTCAACGCCGCCACCGCCGACGACCACTCTATCCTCGACTATTAA

Peptide Sequence

PEP ID

Os01t0102300-01
PEP Infomation

pep chromosome:IRGSP-1.0:1:134300:135439:1 gene:Os01g0102300 transcript:Os01t0102300-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsTLP27 description:Thylakoid lumen protein, Photosynthesis and chloroplast development (Os01t0102300-01)
Sequence

MTSSLSSSTASAAACCKSRSRNPPPAPAPHTSTARVVRSSRRRLLLVFFSAEAAAAATSG
LIQTPCGQAYPFAGTNVKKPQPPSTPYSQSQSQQQFGLDAKGRIRACPSTNPGCVSTNPT
VGASCSLASPLIVPANTPTDKAAASLREAILKTQRNAVIKADEETAYGHYIQAEVDGGAG
RDVMEFLLKESQSQSQEVVAAYRCVATKVIFVYPFTTAVGDSRGQSQRIAAVAQELGWYA
PDLLNAATADDHSILDY

Transcript Sequence

Transcript ID

Os01t0102300-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:1:134300:135439:1 gene:Os01g0102300 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsTLP27 description:Thylakoid lumen protein, Photosynthesis and chloroplast development (Os01t0102300-01)
Sequence

GTACGTTTGTAATGACGTCATCATTATCATCATCCACAGCCTCTGCTGCTGCTTGTTGCA
AGAGTAGAAGTCGTAATCCTCCTCCGGCGCCGGCGCCACACACTAGTACTGCACGAGTAG
TTCGCAGCAGCAGGCGGAGGCTTCTCTTAGTATTCTTCTCCGCAGAGGCGGCGGCGGCTG
CGACGAGCGGTCTCATCCAGACCCCGTGTGGGCAAGCCTACCCTTTCGCTGGCACCAACG
TGAAGAAGCCGCAGCCGCCGTCCACCCCTTACTCCCAATCCCAATCGCAGCAGCAGTTTG
GCCTCGACGCCAAAGGGAGGATTAGGGCGTGCCCGTCGACGAACCCCGGATGCGTGTCCA
CAAACCCCACGGTGGGCGCATCTTGCTCCTTGGCCTCCCCGCTCATCGTCCCCGCTAATA
CACCAACGGACAAGGCCGCCGCTTCGCTGCGCGAGGCTATCCTCAAGACGCAGAGGAATG
CGGTGATCAAAGCCGACGAGGAGACGGCGTACGGGCACTACATCCAGGCGGAGGTCGACG
GCGGCGCAGGCCGCGACGTGATGGAGTTCCTCCTCAAGGAATCCCAGTCCCAGTCCCAGG
AGGTGGTGGCCGCGTACCGATGCGTCGCCACCAAGGTCATCTTCGTCTACCCCTTCACCA
CTGCCGTCGGCGATTCAAGAGGGCAGAGCCAGAGGATCGCCGCCGTCGCCCAGGAGCTCG
GATGGTACGCCCCGGACCTACTCAACGCCGCCACCGCCGACGACCACTCTATCCTCGACT
ATTAACCAAGGCCATACATATGCTTGCTTCATTATCTCTAGTCTGTACAAGTACAACTCG
TCCAAATTCATTCATCCATCCATCCATCCACGACACATATACAAATACTAATCTATTATT
ACTACTAAGTAGTACTAGTAGCCACCGATATATATACACAACAAATGTATTAATCAAAAT
GCTAATTTATT