Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os01t0100900-01
CDS Infomation	cds chromosome:IRGSP-1.0:1:35623:41136:1 gene:Os01g0100900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SPHINGOSINE-1-PHOSPHATE LYASE 1, Sphingosine-1-Phoshpate Lyase 1 description:Sphingosine-1-phosphate lyase, Disease resistance response (Os01t0100900-01)
Sequence	ATGGAGCTCGCCATGGATTTTGCGCTCCGCCTCCGCGACGCCGCCAACCACCACCTCTCC CGCTACGAGCCTCTCGTGCTCCTCGCCGCGCCCCTCCTCGCCCTCCTCGCTGCCCGCACC CTCCACGCCGCCGCTGCCGCCGTCGCCGACCGCGGTCTCCGCACCGTCCTCCTCGCTCTA GCCATGACAGCCATCAAGTTGCTTCCGGGAGTTAGCGCCTACATCAACGCTGAGAAGAGG AAGGTTGTTGACCAGCTGCAGTCAGGTGGCACGTCCACAAAAAGTACTCTGCGGACCGAG TTGCCAACTGTTGGGCTTTCCAACCAAGTGATAAACGATCTCGAAACACTGAAAGCTAGA GATGTAAACTGGCAGGGAAAATGCTCTGGCACAGTTTATATTGCTGGGAGTGAATCCGAA GGTCATTTTGCATTGATAAACAAGGCTTACTCTATGTTTTCACACACCAACCCACTTCAC CAGGACGTATTCAAGAGTGTGGCACAATTAGAGGCTGAAGTAGTTGCAATGACAGCTGCT TTGCTTGGCATCAAAGAAAAATCATCCGGTGGACAGATTTGTGGTAATATGACATCGGGC GGAACTGAAAGCATATTATTAGCAGTAAAAACATCACGCGACTATATGCGAACAAAGAAG GGCATTACAAAGCCTGAAATGATAATTGCCGAATCAGCACATTCTGCATACGATAAAGCT GCTCAATATTTCAATATTAAAGTGCGGCGTGTGCCAGTGAACAAAGAGTTTCTTGCAGAT GTGAAAGGATTCAAAAGGTGTATAAACGGAAATACGATAATGATGGTGGGGTCTGCACCA GGATTTCCTCATGGTTTAATTGATCCTATTGAGGAACTTGGGGAGTTGGCTTCACGATAT GACATTTGCTTGCATGTTGATCTCTGCCTTGGTGGATTTGTATTGCCTTTCGCTCGTAAG CTTGGGTACCCTATTCCTCCATTCGACTTCTGTGTCAAGGGAGTTACATCAATCTCAACT GATGTTCATAAGTATGGATTAGCCCCAAAAGGGACAAGCATTGTCCTATATAAAAATCAT GAAATTAGAAAGCATCAATTTGTTGCTGTTACTGAATGGACTGGTGGGCTCTATGTTTCA CCTACTATTGCTGGAAGTAGGCCTGGTGGGTTGATAGCGGGAGCTTGGGCTGCTATGACG TCTCTTGGACTGAACGGTTATATGGAAAATACAGGTCATATCATGGAAGTGTCGAAGAAA ATACAAAGAGGGATTGAAGATATCCCAGGGTTGTTTGTGATTGGAAAGCCAGACATGACT GTCGTGGCATTTGGCTCAGATTCGGTTGATATATTTGAGGTGAACGACATAATGTCATCA AAAGGCTGGCACCTTAATGCTCTGCAGAGACCCAACAGTTTACACATTTGTGTGACACTG CAGCACACGGTCATATATGAGGAATTCCTGAAGGATCTGAAAGATTCAGTGGACACTGTA AAAGCAAATCCAGGGCCTATTAGCGGGGGGCGAGCTCCGATTTACGGAGCTGCTGGCAAG ATGCCGGACAGAGGCATGGTCAGGGAGCTGCTGGTGGAGTTCATGGACGCGTCTTGCTGA

Peptide Sequence

PEP ID	Os01t0100900-01
PEP Infomation	pep chromosome:IRGSP-1.0:1:35623:41136:1 gene:Os01g0100900 transcript:Os01t0100900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SPHINGOSINE-1-PHOSPHATE LYASE 1, Sphingosine-1-Phoshpate Lyase 1 description:Sphingosine-1-phosphate lyase, Disease resistance response (Os01t0100900-01)
Sequence	MELAMDFALRLRDAANHHLSRYEPLVLLAAPLLALLAARTLHAAAAAVADRGLRTVLLAL AMTAIKLLPGVSAYINAEKRKVVDQLQSGGTSTKSTLRTELPTVGLSNQVINDLETLKAR DVNWQGKCSGTVYIAGSESEGHFALINKAYSMFSHTNPLHQDVFKSVAQLEAEVVAMTAA LLGIKEKSSGGQICGNMTSGGTESILLAVKTSRDYMRTKKGITKPEMIIAESAHSAYDKA AQYFNIKVRRVPVNKEFLADVKGFKRCINGNTIMMVGSAPGFPHGLIDPIEELGELASRY DICLHVDLCLGGFVLPFARKLGYPIPPFDFCVKGVTSISTDVHKYGLAPKGTSIVLYKNH EIRKHQFVAVTEWTGGLYVSPTIAGSRPGGLIAGAWAAMTSLGLNGYMENTGHIMEVSKK IQRGIEDIPGLFVIGKPDMTVVAFGSDSVDIFEVNDIMSSKGWHLNALQRPNSLHICVTL QHTVIYEEFLKDLKDSVDTVKANPGPISGGRAPIYGAAGKMPDRGMVRELLVEFMDASC

Transcript Sequence

Transcript ID	Os01t0100900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:1:35623:41136:1 gene:Os01g0100900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SPHINGOSINE-1-PHOSPHATE LYASE 1, Sphingosine-1-Phoshpate Lyase 1 description:Sphingosine-1-phosphate lyase, Disease resistance response (Os01t0100900-01)
Sequence	GTGTAGCTCCTCTTCTCCTCATTGCTGGCTTGGCCTTTGGCTATACCTTCCCTTCATCAC CTCCTAGTATAAAGCAATTCAATTCCCAATCCCCCCGGCCCGAAGTGAAGGAAGCGGATC ATGGAGCTCGCCATGGATTTTGCGCTCCGCCTCCGCGACGCCGCCAACCACCACCTCTCC CGCTACGAGCCTCTCGTGCTCCTCGCCGCGCCCCTCCTCGCCCTCCTCGCTGCCCGCACC CTCCACGCCGCCGCTGCCGCCGTCGCCGACCGCGGTCTCCGCACCGTCCTCCTCGCTCTA GCCATGACAGCCATCAAGTTGCTTCCGGGAGTTAGCGCCTACATCAACGCTGAGAAGAGG AAGGTTGTTGACCAGCTGCAGTCAGGTGGCACGTCCACAAAAAGTACTCTGCGGACCGAG TTGCCAACTGTTGGGCTTTCCAACCAAGTGATAAACGATCTCGAAACACTGAAAGCTAGA GATGTAAACTGGCAGGGAAAATGCTCTGGCACAGTTTATATTGCTGGGAGTGAATCCGAA GGTCATTTTGCATTGATAAACAAGGCTTACTCTATGTTTTCACACACCAACCCACTTCAC CAGGACGTATTCAAGAGTGTGGCACAATTAGAGGCTGAAGTAGTTGCAATGACAGCTGCT TTGCTTGGCATCAAAGAAAAATCATCCGGTGGACAGATTTGTGGTAATATGACATCGGGC GGAACTGAAAGCATATTATTAGCAGTAAAAACATCACGCGACTATATGCGAACAAAGAAG GGCATTACAAAGCCTGAAATGATAATTGCCGAATCAGCACATTCTGCATACGATAAAGCT GCTCAATATTTCAATATTAAAGTGCGGCGTGTGCCAGTGAACAAAGAGTTTCTTGCAGAT GTGAAAGGATTCAAAAGGTGTATAAACGGAAATACGATAATGATGGTGGGGTCTGCACCA GGATTTCCTCATGGTTTAATTGATCCTATTGAGGAACTTGGGGAGTTGGCTTCACGATAT GACATTTGCTTGCATGTTGATCTCTGCCTTGGTGGATTTGTATTGCCTTTCGCTCGTAAG CTTGGGTACCCTATTCCTCCATTCGACTTCTGTGTCAAGGGAGTTACATCAATCTCAACT GATGTTCATAAGTATGGATTAGCCCCAAAAGGGACAAGCATTGTCCTATATAAAAATCAT GAAATTAGAAAGCATCAATTTGTTGCTGTTACTGAATGGACTGGTGGGCTCTATGTTTCA CCTACTATTGCTGGAAGTAGGCCTGGTGGGTTGATAGCGGGAGCTTGGGCTGCTATGACG TCTCTTGGACTGAACGGTTATATGGAAAATACAGGTCATATCATGGAAGTGTCGAAGAAA ATACAAAGAGGGATTGAAGATATCCCAGGGTTGTTTGTGATTGGAAAGCCAGACATGACT GTCGTGGCATTTGGCTCAGATTCGGTTGATATATTTGAGGTGAACGACATAATGTCATCA AAAGGCTGGCACCTTAATGCTCTGCAGAGACCCAACAGTTTACACATTTGTGTGACACTG CAGCACACGGTCATATATGAGGAATTCCTGAAGGATCTGAAAGATTCAGTGGACACTGTA AAAGCAAATCCAGGGCCTATTAGCGGGGGGCGAGCTCCGATTTACGGAGCTGCTGGCAAG ATGCCGGACAGAGGCATGGTCAGGGAGCTGCTGGTGGAGTTCATGGACGCGTCTTGCTGA ACATATAATATATCCCCTGTTCTTGTTATTGTGGCATTGCTGATTACTGTTGTACTAGTA TTATCATCATGTTCATGTACTCACCATAGAACCAAAACATAGCCATAGAATAAAATGCTT ATTTGATCC