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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

CAA33998
CDS Infomation

cds chromosome:IRGSP-1.0:Pt:44810:45415:-1 gene:CAA33998 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RPS4 description:30S ribosomal protein S4, chloroplastic [Source:UniProtKB/TrEMBL;Acc:E9KIP2]
Sequence

ATGTCCCGTTATCGAGGACCTCGTTTTAAAAAAATACGCCGTCTGGGAGCTTTACCAGGA
CTCACTAGAAAAACACCTAAATCCGGAAGTAATCTGAAAAAGAAATTCCATTCTGGGAAA
AAAGAACAATATCGTATTCGTCTTCAAGAAAAACAGAAATTGCGTTTTCATTATGGTCTG
ACAGAACGACAATTACTTAGATATGTACATATCGCTGGAAAAGCAAAAAGTTCAACAGGT
CAGGTTTTACTACAATTACTTGAAATGCGTTTGGATAATATCCTTTTTCGATTAGGTATG
GCTTCAACCATTCCCGAGGCCCGGCAATTAGTTAACCATAGACATATTTTAGTTAATGGT
CGTATAGTCGATATACCAAGTTTTCGTTGCAAACCCCGAGATATTATTACTACGAAGGAT
AACCAAAGATCAAAACGTCTGGTTCAAAATTCTATTGCTTCATCCGACCCGGGGAAATTG
CCAAAGCATTTGACGATTGACACATTGCAATATAAAGGACTAGTAAAAAAAATCCTGGAT
AGGAAGTGGGTCGGTCTCAAAATAAATGAGTTGTTAGTTGTAGAATATTACTCTCGTCAA
ACTTGA

Peptide Sequence

PEP ID

CAA33998
PEP Infomation

pep chromosome:IRGSP-1.0:Pt:44810:45415:-1 gene:CAA33998 transcript:CAA33998 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RPS4 description:30S ribosomal protein S4, chloroplastic [Source:UniProtKB/TrEMBL;Acc:E9KIP2]
Sequence

MSRYRGPRFKKIRRLGALPGLTRKTPKSGSNLKKKFHSGKKEQYRIRLQEKQKLRFHYGL
TERQLLRYVHIAGKAKSSTGQVLLQLLEMRLDNILFRLGMASTIPEARQLVNHRHILVNG
RIVDIPSFRCKPRDIITTKDNQRSKRLVQNSIASSDPGKLPKHLTIDTLQYKGLVKKILD
RKWVGLKINELLVVEYYSRQT

Transcript Sequence

Transcript ID

CAA33998
Transcript Infomation

cdna chromosome:IRGSP-1.0:Pt:44810:45415:-1 gene:CAA33998 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RPS4 description:30S ribosomal protein S4, chloroplastic [Source:UniProtKB/TrEMBL;Acc:E9KIP2]
Sequence

ATGTCCCGTTATCGAGGACCTCGTTTTAAAAAAATACGCCGTCTGGGAGCTTTACCAGGA
CTCACTAGAAAAACACCTAAATCCGGAAGTAATCTGAAAAAGAAATTCCATTCTGGGAAA
AAAGAACAATATCGTATTCGTCTTCAAGAAAAACAGAAATTGCGTTTTCATTATGGTCTG
ACAGAACGACAATTACTTAGATATGTACATATCGCTGGAAAAGCAAAAAGTTCAACAGGT
CAGGTTTTACTACAATTACTTGAAATGCGTTTGGATAATATCCTTTTTCGATTAGGTATG
GCTTCAACCATTCCCGAGGCCCGGCAATTAGTTAACCATAGACATATTTTAGTTAATGGT
CGTATAGTCGATATACCAAGTTTTCGTTGCAAACCCCGAGATATTATTACTACGAAGGAT
AACCAAAGATCAAAACGTCTGGTTCAAAATTCTATTGCTTCATCCGACCCGGGGAAATTG
CCAAAGCATTTGACGATTGACACATTGCAATATAAAGGACTAGTAAAAAAAATCCTGGAT
AGGAAGTGGGTCGGTCTCAAAATAAATGAGTTGTTAGTTGTAGAATATTACTCTCGTCAA
ACTTGA