Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	CAA33996
CDS Infomation	cds chromosome:IRGSP-1.0:Pt:38998:41250:-1 gene:CAA33996 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:psaA description:PSI P700 apoprotein A1
Sequence	ATGATGATTCGTTCGCCGGAACCAGAAGTAAAAATTGTTGTGGATAGGGATCCTGTAAAA ACATCTTTTGAGGAATGGGCCAGACCCGGCCATTTCTCAAGAACACTAGCTAAGGGCCCT GATACTACCACTTGGATCTGGAACCTACATGCTGATGCTCACGATTTCGATAGTCATACA GGTGATTTGGAGGAGATCTCTCGAAAAGTCTTTAGTGCTCATTTCGGTCAACTCTCCATT ATCTTTCTTTGGTTGAGTGGCATGTACTTCCATGGTGCCCGTTTTTCCAATTATGAAGCA TGGCTAAGTGATCCTACTCACATTGGACCCAGTGCTCAGGTAGTTTGGCCAATCGTAGGG CAAGAAATATTGAATGGTGATGTAGGCGGGGGTTTCCGAGGAATCCAAATATCCTCCGGC TTTTTTCAGATTTGGCGAGCATCCGGAATAACTAGTGAATTACAACTCTATTGTACCGCA ATCGGTGCATTGATTTTTGCATCGTTAATGCTTTTTGCTGGGTGGTTCCATTATCACAAA GCCGCTCCCAAATTAGCCTGGAGTCATGACGTAGAATCCATGTTGAATCATCACTTAGCA GGGTTATTAGGACTTGGGTCTCTTTCTTGGGCGGGGCACCAAATCCATGTATCTTTACCG ATTAACCAATTTCTTGACGCTGGGGTTGATCCTAAGGAGATACCACTTCCTCATGAATTT ATCTTGAATCGCGACCTTTTGGCTCAACTTTATCCTAGTTTTGCCGAACGAGCAACCCCT TTTTTCACCTTGAATTGGTCCAAATACGCAGAATTTCTTAGTTTTCGCGGAGGGCTAGAT CCAATAACCGGCGGTCTATGGTTGAGCGATATTGCGCACCATCATTTAGCTATTGCTATT CTTTTCCTGATCGCAGGTCATATGTATAGGACCAACTGGGGTATTGGTCATGGCCTGAAA GATATTTTGGAGGCTCATAAAGGCCCATTTACAGGACAGCGCCATAAAGGTCTCTATGAA ATCCTAACAACGTCATGGCATGCTCAATTATCTCTTAACCTAGCTATGCTAGGCTCTACA ACCATTGTTGTAGCTCATCATATGTACTCTATGCCCCCCTATCCATACCTAGCTACTGAC TATGGTACACAACTTTCCTTGTTCACACACCACATGTGGATTGGCGGATTTCTAATAGTT GGTGCTGCTGCACATGCAGCCATTTTTATGGTAAGAGACTATGATCCAACGACTCGATAC AACGATCTATTAGATCGTGTCCTTAGACACCGTGATGCAATCATATCCCACCTTAACTGG GTATGTATATTTCTAGGTTTTCACAGTTTTGGTTTATACATTCATAATGATACCATGAGT GCTTTAGGTCGTCCCCAAGATATGTTTTCGGATACCGCCATACAATTACAACCGATCTTT GCTCAATGGGTACAAAATCTCCATGCTGGCGCGCCTAGGCTAACAGCTCCTGGTGCAACA ACAAGTACCAGCTTAACGTGGGGAGGTGGCGAGTTAGTAGCAGTAGGCGGCAAAGTTGCT TTGTTACCTATTCCATTAGGAACCGCAGATTTTTTAGTCCATCACATTCACGCATTTACA ATCCATGTGACTGTATTAATACTTTTGAAAGGTGTTTTATTTGCTCGCAGTTCCCGTTTG ATACCCGATAAAGCAAATCTTGGTTTTCGCTTCCCTTGCGATGGGCCTGGGCGAGGGGGA ACATGTCAAGTATCCGCCTGGGATCATGTTTTCTTAGGTCTATTCTGGATGTACAATTCC ATTTCGGTAGTCATTTTCCATTTCAGTTGGAAAATGCAGTCGGATGTTTGGGGTACTATA AGTGATCAAGGGGTGGTAACTCATATCACAGGGGGAAACTTTGCACAGAGTTCCATTACG ATTAATGGGTGGCTCCGAGATTTCTTGTGGGCACAGGCATCCCAAGTAATTCAGTCTTAT GGTTCTTCATTATCCGCATATGGTCTTTTTTTCTTAGGTGCTCATTTTGTCTGGGCCTTC AGTTTAATGTTTTTATTCAGCGGCCGTGGTTATTGGCAAGAACTGATTGAATCTATCGTT TGGGCTCATAACAAATTAAAAGTTGCTCCTGCTACTCAGCCTAGAGCCTTGAGCATTATA CAAGGACGTGCTGTAGGAGTAACCCATTACCTTCTGGGTGGAATTGCCACAACATGGGCA TTCTTCTTAGCGAGAATTATTGCAGTAGGATAG

Peptide Sequence

PEP ID	CAA33996
PEP Infomation	pep chromosome:IRGSP-1.0:Pt:38998:41250:-1 gene:CAA33996 transcript:CAA33996 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:psaA description:PSI P700 apoprotein A1
Sequence	MMIRSPEPEVKIVVDRDPVKTSFEEWARPGHFSRTLAKGPDTTTWIWNLHADAHDFDSHT GDLEEISRKVFSAHFGQLSIIFLWLSGMYFHGARFSNYEAWLSDPTHIGPSAQVVWPIVG QEILNGDVGGGFRGIQISSGFFQIWRASGITSELQLYCTAIGALIFASLMLFAGWFHYHK AAPKLAWSHDVESMLNHHLAGLLGLGSLSWAGHQIHVSLPINQFLDAGVDPKEIPLPHEF ILNRDLLAQLYPSFAERATPFFTLNWSKYAEFLSFRGGLDPITGGLWLSDIAHHHLAIAI LFLIAGHMYRTNWGIGHGLKDILEAHKGPFTGQRHKGLYEILTTSWHAQLSLNLAMLGST TIVVAHHMYSMPPYPYLATDYGTQLSLFTHHMWIGGFLIVGAAAHAAIFMVRDYDPTTRY NDLLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPIF AQWVQNLHAGAPRLTAPGATTSTSLTWGGGELVAVGGKVALLPIPLGTADFLVHHIHAFT IHVTVLILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNS ISVVIFHFSWKMQSDVWGTISDQGVVTHITGGNFAQSSITINGWLRDFLWAQASQVIQSY GSSLSAYGLFFLGAHFVWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPATQPRALSII QGRAVGVTHYLLGGIATTWAFFLARIIAVG

Transcript Sequence

Transcript ID	CAA33996
Transcript Infomation	cdna chromosome:IRGSP-1.0:Pt:38998:41250:-1 gene:CAA33996 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:psaA description:PSI P700 apoprotein A1
Sequence	ATGATGATTCGTTCGCCGGAACCAGAAGTAAAAATTGTTGTGGATAGGGATCCTGTAAAA ACATCTTTTGAGGAATGGGCCAGACCCGGCCATTTCTCAAGAACACTAGCTAAGGGCCCT GATACTACCACTTGGATCTGGAACCTACATGCTGATGCTCACGATTTCGATAGTCATACA GGTGATTTGGAGGAGATCTCTCGAAAAGTCTTTAGTGCTCATTTCGGTCAACTCTCCATT ATCTTTCTTTGGTTGAGTGGCATGTACTTCCATGGTGCCCGTTTTTCCAATTATGAAGCA TGGCTAAGTGATCCTACTCACATTGGACCCAGTGCTCAGGTAGTTTGGCCAATCGTAGGG CAAGAAATATTGAATGGTGATGTAGGCGGGGGTTTCCGAGGAATCCAAATATCCTCCGGC TTTTTTCAGATTTGGCGAGCATCCGGAATAACTAGTGAATTACAACTCTATTGTACCGCA ATCGGTGCATTGATTTTTGCATCGTTAATGCTTTTTGCTGGGTGGTTCCATTATCACAAA GCCGCTCCCAAATTAGCCTGGAGTCATGACGTAGAATCCATGTTGAATCATCACTTAGCA GGGTTATTAGGACTTGGGTCTCTTTCTTGGGCGGGGCACCAAATCCATGTATCTTTACCG ATTAACCAATTTCTTGACGCTGGGGTTGATCCTAAGGAGATACCACTTCCTCATGAATTT ATCTTGAATCGCGACCTTTTGGCTCAACTTTATCCTAGTTTTGCCGAACGAGCAACCCCT TTTTTCACCTTGAATTGGTCCAAATACGCAGAATTTCTTAGTTTTCGCGGAGGGCTAGAT CCAATAACCGGCGGTCTATGGTTGAGCGATATTGCGCACCATCATTTAGCTATTGCTATT CTTTTCCTGATCGCAGGTCATATGTATAGGACCAACTGGGGTATTGGTCATGGCCTGAAA GATATTTTGGAGGCTCATAAAGGCCCATTTACAGGACAGCGCCATAAAGGTCTCTATGAA ATCCTAACAACGTCATGGCATGCTCAATTATCTCTTAACCTAGCTATGCTAGGCTCTACA ACCATTGTTGTAGCTCATCATATGTACTCTATGCCCCCCTATCCATACCTAGCTACTGAC TATGGTACACAACTTTCCTTGTTCACACACCACATGTGGATTGGCGGATTTCTAATAGTT GGTGCTGCTGCACATGCAGCCATTTTTATGGTAAGAGACTATGATCCAACGACTCGATAC AACGATCTATTAGATCGTGTCCTTAGACACCGTGATGCAATCATATCCCACCTTAACTGG GTATGTATATTTCTAGGTTTTCACAGTTTTGGTTTATACATTCATAATGATACCATGAGT GCTTTAGGTCGTCCCCAAGATATGTTTTCGGATACCGCCATACAATTACAACCGATCTTT GCTCAATGGGTACAAAATCTCCATGCTGGCGCGCCTAGGCTAACAGCTCCTGGTGCAACA ACAAGTACCAGCTTAACGTGGGGAGGTGGCGAGTTAGTAGCAGTAGGCGGCAAAGTTGCT TTGTTACCTATTCCATTAGGAACCGCAGATTTTTTAGTCCATCACATTCACGCATTTACA ATCCATGTGACTGTATTAATACTTTTGAAAGGTGTTTTATTTGCTCGCAGTTCCCGTTTG ATACCCGATAAAGCAAATCTTGGTTTTCGCTTCCCTTGCGATGGGCCTGGGCGAGGGGGA ACATGTCAAGTATCCGCCTGGGATCATGTTTTCTTAGGTCTATTCTGGATGTACAATTCC ATTTCGGTAGTCATTTTCCATTTCAGTTGGAAAATGCAGTCGGATGTTTGGGGTACTATA AGTGATCAAGGGGTGGTAACTCATATCACAGGGGGAAACTTTGCACAGAGTTCCATTACG ATTAATGGGTGGCTCCGAGATTTCTTGTGGGCACAGGCATCCCAAGTAATTCAGTCTTAT GGTTCTTCATTATCCGCATATGGTCTTTTTTTCTTAGGTGCTCATTTTGTCTGGGCCTTC AGTTTAATGTTTTTATTCAGCGGCCGTGGTTATTGGCAAGAACTGATTGAATCTATCGTT TGGGCTCATAACAAATTAAAAGTTGCTCCTGCTACTCAGCCTAGAGCCTTGAGCATTATA CAAGGACGTGCTGTAGGAGTAACCCATTACCTTCTGGGTGGAATTGCCACAACATGGGCA TTCTTCTTAGCGAGAATTATTGCAGTAGGATAG