Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	CAA33988
CDS Infomation	cds chromosome:IRGSP-1.0:Pt:24727:29268:1 gene:CAA33988 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rpoC2 description:RNA polymerase beta' subunit-2
Sequence	ATGGCGGAACGGGCCAATCTGGTCTTTCAGAATAAAGAGATAGATGGAACTGCTATGAAA CGACTTATTAGCAGATTAATAGATCATTTCGGAATGGGATATACATCCCATATACTGGAT CAAATAAAAACGCTGGGCTTCCATCAAGCCACTACTACATCGATTTCATTAGGAATCGAG GATCTTTTAACAATACCCTCTAAGGGATGGTTAGTCCAAGATGCGGAACAACAGAGTTTT CTTTTGGAAAAACACTATTATTATGGGGCTGTACACGCGGTAGAAAAATTACGCCAATCC GTTGAAATCTGGTATGCTACAAGTGAATATTTGAAACACGAAATGAATTCGAATTTTCGG ATAACAGATCCTTCTAATCCAGTCTATCTAATGTCTTTTTCAGGAGCTAGAGGAAATGCA TCGCAGGTACACCAATTAGTAGGTATGCGAGGATTAATGGCGGATCCTCAAGGACAAATG ATTGATTTACCTATTCAAAGCAATTTACGCGAGGGACTTTCTTTGACAGAATATATAATT TCCTGCTACGGAGCCCGCAAAGGGGTTGTAGATACTGCTGTACGAACGGCGGATGCTGGA TATCTTACACGTAGACTTGTTGAAGTAGTTCAACATATTATTGTGCGTAGAAGAGATTGT GGTACTATCCAAGCTATTTCTGTGAGTCCTCAAAATGGGATGACGGAAAAACTTTTTGTA CAAACATTAATTGGTCGTGTATTAGCAAACGATATATATATCGGTTCACGGTGCATTGCC ACTCGAAATCAAGATATTGGAATTGGGTTAGTCAATCGATTCATAACCACCTTTCGAGCA CAGCCATTTCGAGCACAACCAATATATATTAGAACCCCCTTTACTTGCCGGAGCACATCT TGGATCTGTCAATTATGTTATGGTCGGAGTTCCACTCATGGCGATCTGGTCGAATTGGGG GAAGCTGTAGGTGTTATTGCGGGTCAATCTATTGGGGAGCCAGGGACTCAACTAACATTA AGAACTTTTCATACTGGTGGGGTATTCACAGGGGGTACTGCCGACCTTGTACGATCCCCT TCAAATGGAAAAATCCAATTCAATGGGGATTTGGTTCACCCCACACGTACCCGTCATGGG CAGCCTGCTTTTCTATGTTATATAGACTTGCATATAACTATTCAGAGTCAGGATATTCTA CATAGTGTGACTATTCCTTCAAAAAGCTTGATTCTAGTGCAAAATGATCAATATGTAGAA TCCGAACAAGTAATTGCGGAGATTCGTGCCGGAACGTCCGCTTTGCATTTTAAAGAAAAG GTACAAAAACATATTTATTCCGAATCAGATGGGGAAATGCACTGGAGTACCGATGTTTAT CATGCGCCCGAATATCAATATGGTAATCTTCGTCGATTACCAAAAACAAGCCATTTATGG ATATTGTCAGTAAGTATGTGCAGATCTAGTATAGCTTCTTTTTCGCTCCACAAGGATCAA GATCAAATGAATACTTATTCCTTTTCTGTTGACGGAAGGTATATCTTTGGCCTCTCGATG GCTGATGATGAGGTAAGACATAGACTGTTGGATACTTTTGGTAAAAAAGATAGGGAAATT CTTGATTATTCAACGCCGGATCGAATCATGTCCAATGGTCATTGGAATTTTGTCTATCCT TCTATTCTTCAAAATAATTTTGATTTGTTAGCGAAAAAGCGAAGAAATAGGTTCGCCATT CCATTACAGTATCATCAAGAACAAGAGAAAGAACCAATATCCTGTTTTGGGATTTCGATT GAAATACCCTTTATGGGTGTTTTACGTAGAAATACTATAGTTGCTTATTTTGACGACCCA CGATACAAAAAAGATAAAAAGGGTTCAGGAATTGTTAAATTTAGATATAGGACCCTAGAG GACGAATATAGGACTCGAGAGAAAGACTCAGAGAACGAATACGGGAGCCCAGAAAACGAA TATAGGACCCGAGAGGAAGAATGTAAAACCCTAGAAGACGAATATAGGACTCGAGAGGAG GAGTATGAAACCCTAGAAGATGAATATGGGATCCCAGAGAACGAATATGAAACCCTAGAA GATGAATATGGAATCCTAGAGGACGAATATAGGACTCGAGAGGAGGAATCCGAGGACGAA TATGGGAGTCCAGAGAACAAATATAGGCCCCGAGAGGATAAATATGGCACTTTAGAGGAA GACTCAGAGGACGAACATGGGACTTTAGAGGAAGACTCAGAGGAAGACTCAGAGGACGAA TATGGGAACCCGGAGGAAGATTCCGTCTTAAAAAAGGGGGTTTTGATTGAGCATCGAGGA ACAAAAGAATTTAGTCTAAAATACCAAAAAGAAGTAGATCGGTTTTTTTTCATTCTCCAA GAACTGCATATCTTGCCGAGATCCTCATCCCTAAAGGTACTTGACAATAGTATTATTGGA GTGGATACACAACTCACAAAAAATACAAGAAGTCGGCTGGGTGGATTGGTTCGAGTGAAG AGAAAAAAAAGCCATACGGAACTAAAAATCTTTTCTGGAGATATTCATTTTCCTGAAGAG GCGGATAAGATATTAGGTGGCAGTTTGATACCACTAGAAAGAGAAAAAAAAGATTCGAAG GAATCAAAAAAAAGGGAAAATTGGGTCTATGTTCAGTGGAAAAAAATTCTCAAGAGCAAG GAAAAGTATTTTGTTTTGGTTCGACCTGCAGTCGCGTATGAAATGAACGAAGGGAGAAAT TTAGCAACACTTTTCCCACAGGATCTCTTCGAGGAAGAGGGTAATCTCCAACTTCGACTT GTCAATTTTATTTCTCATGAAAATAGCAAGTTAACTCAAAGAATTTATCATACGAATAGT CAATTCGTTCGAACTTGCTTAGTATTGAATTGGGAACAAGAAGAAAAAGAGGAGGCTCGT GCTTCCCTTGTTGAGATAAGAGCAAATGGTCTGATTCGCGATTTCCTAAGAATTGGGTTA ATCAAATCCACTATTTCGTATACACGAAAAAGGTATGATAGCAGAAGTGCAGGACTGATT CTCCATAATAGGTTAGATCGCACCAATACCAATTCCTTTTATTCCAAGGCGAAGATTCAA TCACTTAGCCAACATCAAGAAGCTATTGGTACCTTGTTGAATCGAAATAAAGAATACCAA TCTTTGATGGTTTTGTCGGCATCCAACTGTTCTCGAATTGGTTTTTTTAAGAATTCAAAA AATCCCAATGGGGTAAAAGAATCGAATCCTAGAATTCCTATTCCAAAATTTTGGGGGCTC TTTCGAAATTTTTCGGGACTCTTAGGTACTATTGCACCTAGTATATCGAATTTTTCTTCA TCTTACTATTTACTAACGTATAATCAGATCCTGTTAAAAAAGCATTTGCTCCTTGACAAT TTGAAACAAAACTTCAAAGTACTTCAAGGACTTAAACACTCTTTAATAAATGAAAATCAA AGGACTTCAAATTTCGATAGTAACATCATGTTGGATCCATTCCAGTTAAATTGGCACTTT CTCCCTCATGATTCTTGGGAAGAGACATCAGCAAAAATTCACCTTGGACAATTTATTTGC GAAAATGTATGTCTATTTAAATCGCACATAAAAAAATCAGGTCAAATTTTCATTGTAAAT ATAGATTCCTTTGTTATAAGAGCAGCTAAGCCTTATTTGGCCACTACAGGAGCAACTGTT CATGGTCATTATGGAGAAATCCTTTACAAAGGGGATAGGTTAGTTACGTTTATATACGAA AAAGCGAGATCTAGTGACATAACGCAAGGTCTTCCAAAAGTAGAACAAATCTTCGAAGCG CGTTCAATTGATTCACTATCGCCGAATCTCGAAAGGAGAATTGAGGATTGGAATGAGCGT ATACCAAGAATTCTTGGGGGTCCTTGGGGATTCTTGATTGGAGCTGAGTTAACCATAGCC CAAAGTCGTATCTCTTTGGTTAATAAGATCCAAAAGGTTTATCGATCCCAAGGGGTACAG ATCCATAATAGACATATAGAGATTATTATACGCCAAGTAACATCAAAAGTGCGGGTTTCC GAAGATGGAATGTCTAATGTTTTTTCACCTGGGGAATTAATTGGACTATTGCGAGCAGAG CGAGCAGGGCGGGCTTTGGATGAATCGATCTATTATCGGGCAATCTTATTGGGAATAACA AGGGTTTCCCTGAATACCCAAAGTTTCATATCTGAAGCAAGTTTTCAAGAAACTGCTCGA GTTTTAGCAAAAGCTGCCTTACGAGGTCGTATTGATTGGTTGAAAGGCCTGAAAGAAAAC GTAGTTCTGGGGGGGATTATACCTGTTGGTACCGGATTCCAAAAATTTGTGCACCGTTAC CCACAAAACAAGAACCTTTATTTCGAAATTCAAAAAAAAAAACTATTTGCGTCGGAAATG AGAGATATTTTGTTTCTCCATACAGAATTAGTTTCTTCTGATTCTGACGTAACAAACAAT TTCTATGAGACATCAGAATCACCATTTACCCCATTTATATGA

Peptide Sequence

PEP ID	CAA33988
PEP Infomation	pep chromosome:IRGSP-1.0:Pt:24727:29268:1 gene:CAA33988 transcript:CAA33988 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rpoC2 description:RNA polymerase beta' subunit-2
Sequence	MAERANLVFQNKEIDGTAMKRLISRLIDHFGMGYTSHILDQIKTLGFHQATTTSISLGIE DLLTIPSKGWLVQDAEQQSFLLEKHYYYGAVHAVEKLRQSVEIWYATSEYLKHEMNSNFR ITDPSNPVYLMSFSGARGNASQVHQLVGMRGLMADPQGQMIDLPIQSNLREGLSLTEYII SCYGARKGVVDTAVRTADAGYLTRRLVEVVQHIIVRRRDCGTIQAISVSPQNGMTEKLFV QTLIGRVLANDIYIGSRCIATRNQDIGIGLVNRFITTFRAQPFRAQPIYIRTPFTCRSTS WICQLCYGRSSTHGDLVELGEAVGVIAGQSIGEPGTQLTLRTFHTGGVFTGGTADLVRSP SNGKIQFNGDLVHPTRTRHGQPAFLCYIDLHITIQSQDILHSVTIPSKSLILVQNDQYVE SEQVIAEIRAGTSALHFKEKVQKHIYSESDGEMHWSTDVYHAPEYQYGNLRRLPKTSHLW ILSVSMCRSSIASFSLHKDQDQMNTYSFSVDGRYIFGLSMADDEVRHRLLDTFGKKDREI LDYSTPDRIMSNGHWNFVYPSILQNNFDLLAKKRRNRFAIPLQYHQEQEKEPISCFGISI EIPFMGVLRRNTIVAYFDDPRYKKDKKGSGIVKFRYRTLEDEYRTREKDSENEYGSPENE YRTREEECKTLEDEYRTREEEYETLEDEYGIPENEYETLEDEYGILEDEYRTREEESEDE YGSPENKYRPREDKYGTLEEDSEDEHGTLEEDSEEDSEDEYGNPEEDSVLKKGVLIEHRG TKEFSLKYQKEVDRFFFILQELHILPRSSSLKVLDNSIIGVDTQLTKNTRSRLGGLVRVK RKKSHTELKIFSGDIHFPEEADKILGGSLIPLEREKKDSKESKKRENWVYVQWKKILKSK EKYFVLVRPAVAYEMNEGRNLATLFPQDLFEEEGNLQLRLVNFISHENSKLTQRIYHTNS QFVRTCLVLNWEQEEKEEARASLVEIRANGLIRDFLRIGLIKSTISYTRKRYDSRSAGLI LHNRLDRTNTNSFYSKAKIQSLSQHQEAIGTLLNRNKEYQSLMVLSASNCSRIGFFKNSK NPNGVKESNPRIPIPKFWGLFRNFSGLLGTIAPSISNFSSSYYLLTYNQILLKKHLLLDN LKQNFKVLQGLKHSLINENQRTSNFDSNIMLDPFQLNWHFLPHDSWEETSAKIHLGQFIC ENVCLFKSHIKKSGQIFIVNIDSFVIRAAKPYLATTGATVHGHYGEILYKGDRLVTFIYE KARSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERIPRILGGPWGFLIGAELTIA QSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFSPGELIGLLRAE RAGRALDESIYYRAILLGITRVSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN VVLGGIIPVGTGFQKFVHRYPQNKNLYFEIQKKKLFASEMRDILFLHTELVSSDSDVTNN FYETSESPFTPFI

Transcript Sequence

Transcript ID	CAA33988
Transcript Infomation	cdna chromosome:IRGSP-1.0:Pt:24727:29268:1 gene:CAA33988 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rpoC2 description:RNA polymerase beta' subunit-2
Sequence	ATGGCGGAACGGGCCAATCTGGTCTTTCAGAATAAAGAGATAGATGGAACTGCTATGAAA CGACTTATTAGCAGATTAATAGATCATTTCGGAATGGGATATACATCCCATATACTGGAT CAAATAAAAACGCTGGGCTTCCATCAAGCCACTACTACATCGATTTCATTAGGAATCGAG GATCTTTTAACAATACCCTCTAAGGGATGGTTAGTCCAAGATGCGGAACAACAGAGTTTT CTTTTGGAAAAACACTATTATTATGGGGCTGTACACGCGGTAGAAAAATTACGCCAATCC GTTGAAATCTGGTATGCTACAAGTGAATATTTGAAACACGAAATGAATTCGAATTTTCGG ATAACAGATCCTTCTAATCCAGTCTATCTAATGTCTTTTTCAGGAGCTAGAGGAAATGCA TCGCAGGTACACCAATTAGTAGGTATGCGAGGATTAATGGCGGATCCTCAAGGACAAATG ATTGATTTACCTATTCAAAGCAATTTACGCGAGGGACTTTCTTTGACAGAATATATAATT TCCTGCTACGGAGCCCGCAAAGGGGTTGTAGATACTGCTGTACGAACGGCGGATGCTGGA TATCTTACACGTAGACTTGTTGAAGTAGTTCAACATATTATTGTGCGTAGAAGAGATTGT GGTACTATCCAAGCTATTTCTGTGAGTCCTCAAAATGGGATGACGGAAAAACTTTTTGTA CAAACATTAATTGGTCGTGTATTAGCAAACGATATATATATCGGTTCACGGTGCATTGCC ACTCGAAATCAAGATATTGGAATTGGGTTAGTCAATCGATTCATAACCACCTTTCGAGCA CAGCCATTTCGAGCACAACCAATATATATTAGAACCCCCTTTACTTGCCGGAGCACATCT TGGATCTGTCAATTATGTTATGGTCGGAGTTCCACTCATGGCGATCTGGTCGAATTGGGG GAAGCTGTAGGTGTTATTGCGGGTCAATCTATTGGGGAGCCAGGGACTCAACTAACATTA AGAACTTTTCATACTGGTGGGGTATTCACAGGGGGTACTGCCGACCTTGTACGATCCCCT TCAAATGGAAAAATCCAATTCAATGGGGATTTGGTTCACCCCACACGTACCCGTCATGGG CAGCCTGCTTTTCTATGTTATATAGACTTGCATATAACTATTCAGAGTCAGGATATTCTA CATAGTGTGACTATTCCTTCAAAAAGCTTGATTCTAGTGCAAAATGATCAATATGTAGAA TCCGAACAAGTAATTGCGGAGATTCGTGCCGGAACGTCCGCTTTGCATTTTAAAGAAAAG GTACAAAAACATATTTATTCCGAATCAGATGGGGAAATGCACTGGAGTACCGATGTTTAT CATGCGCCCGAATATCAATATGGTAATCTTCGTCGATTACCAAAAACAAGCCATTTATGG ATATTGTCAGTAAGTATGTGCAGATCTAGTATAGCTTCTTTTTCGCTCCACAAGGATCAA GATCAAATGAATACTTATTCCTTTTCTGTTGACGGAAGGTATATCTTTGGCCTCTCGATG GCTGATGATGAGGTAAGACATAGACTGTTGGATACTTTTGGTAAAAAAGATAGGGAAATT CTTGATTATTCAACGCCGGATCGAATCATGTCCAATGGTCATTGGAATTTTGTCTATCCT TCTATTCTTCAAAATAATTTTGATTTGTTAGCGAAAAAGCGAAGAAATAGGTTCGCCATT CCATTACAGTATCATCAAGAACAAGAGAAAGAACCAATATCCTGTTTTGGGATTTCGATT GAAATACCCTTTATGGGTGTTTTACGTAGAAATACTATAGTTGCTTATTTTGACGACCCA CGATACAAAAAAGATAAAAAGGGTTCAGGAATTGTTAAATTTAGATATAGGACCCTAGAG GACGAATATAGGACTCGAGAGAAAGACTCAGAGAACGAATACGGGAGCCCAGAAAACGAA TATAGGACCCGAGAGGAAGAATGTAAAACCCTAGAAGACGAATATAGGACTCGAGAGGAG GAGTATGAAACCCTAGAAGATGAATATGGGATCCCAGAGAACGAATATGAAACCCTAGAA GATGAATATGGAATCCTAGAGGACGAATATAGGACTCGAGAGGAGGAATCCGAGGACGAA TATGGGAGTCCAGAGAACAAATATAGGCCCCGAGAGGATAAATATGGCACTTTAGAGGAA GACTCAGAGGACGAACATGGGACTTTAGAGGAAGACTCAGAGGAAGACTCAGAGGACGAA TATGGGAACCCGGAGGAAGATTCCGTCTTAAAAAAGGGGGTTTTGATTGAGCATCGAGGA ACAAAAGAATTTAGTCTAAAATACCAAAAAGAAGTAGATCGGTTTTTTTTCATTCTCCAA GAACTGCATATCTTGCCGAGATCCTCATCCCTAAAGGTACTTGACAATAGTATTATTGGA GTGGATACACAACTCACAAAAAATACAAGAAGTCGGCTGGGTGGATTGGTTCGAGTGAAG AGAAAAAAAAGCCATACGGAACTAAAAATCTTTTCTGGAGATATTCATTTTCCTGAAGAG GCGGATAAGATATTAGGTGGCAGTTTGATACCACTAGAAAGAGAAAAAAAAGATTCGAAG GAATCAAAAAAAAGGGAAAATTGGGTCTATGTTCAGTGGAAAAAAATTCTCAAGAGCAAG GAAAAGTATTTTGTTTTGGTTCGACCTGCAGTCGCGTATGAAATGAACGAAGGGAGAAAT TTAGCAACACTTTTCCCACAGGATCTCTTCGAGGAAGAGGGTAATCTCCAACTTCGACTT GTCAATTTTATTTCTCATGAAAATAGCAAGTTAACTCAAAGAATTTATCATACGAATAGT CAATTCGTTCGAACTTGCTTAGTATTGAATTGGGAACAAGAAGAAAAAGAGGAGGCTCGT GCTTCCCTTGTTGAGATAAGAGCAAATGGTCTGATTCGCGATTTCCTAAGAATTGGGTTA ATCAAATCCACTATTTCGTATACACGAAAAAGGTATGATAGCAGAAGTGCAGGACTGATT CTCCATAATAGGTTAGATCGCACCAATACCAATTCCTTTTATTCCAAGGCGAAGATTCAA TCACTTAGCCAACATCAAGAAGCTATTGGTACCTTGTTGAATCGAAATAAAGAATACCAA TCTTTGATGGTTTTGTCGGCATCCAACTGTTCTCGAATTGGTTTTTTTAAGAATTCAAAA AATCCCAATGGGGTAAAAGAATCGAATCCTAGAATTCCTATTCCAAAATTTTGGGGGCTC TTTCGAAATTTTTCGGGACTCTTAGGTACTATTGCACCTAGTATATCGAATTTTTCTTCA TCTTACTATTTACTAACGTATAATCAGATCCTGTTAAAAAAGCATTTGCTCCTTGACAAT TTGAAACAAAACTTCAAAGTACTTCAAGGACTTAAACACTCTTTAATAAATGAAAATCAA AGGACTTCAAATTTCGATAGTAACATCATGTTGGATCCATTCCAGTTAAATTGGCACTTT CTCCCTCATGATTCTTGGGAAGAGACATCAGCAAAAATTCACCTTGGACAATTTATTTGC GAAAATGTATGTCTATTTAAATCGCACATAAAAAAATCAGGTCAAATTTTCATTGTAAAT ATAGATTCCTTTGTTATAAGAGCAGCTAAGCCTTATTTGGCCACTACAGGAGCAACTGTT CATGGTCATTATGGAGAAATCCTTTACAAAGGGGATAGGTTAGTTACGTTTATATACGAA AAAGCGAGATCTAGTGACATAACGCAAGGTCTTCCAAAAGTAGAACAAATCTTCGAAGCG CGTTCAATTGATTCACTATCGCCGAATCTCGAAAGGAGAATTGAGGATTGGAATGAGCGT ATACCAAGAATTCTTGGGGGTCCTTGGGGATTCTTGATTGGAGCTGAGTTAACCATAGCC CAAAGTCGTATCTCTTTGGTTAATAAGATCCAAAAGGTTTATCGATCCCAAGGGGTACAG ATCCATAATAGACATATAGAGATTATTATACGCCAAGTAACATCAAAAGTGCGGGTTTCC GAAGATGGAATGTCTAATGTTTTTTCACCTGGGGAATTAATTGGACTATTGCGAGCAGAG CGAGCAGGGCGGGCTTTGGATGAATCGATCTATTATCGGGCAATCTTATTGGGAATAACA AGGGTTTCCCTGAATACCCAAAGTTTCATATCTGAAGCAAGTTTTCAAGAAACTGCTCGA GTTTTAGCAAAAGCTGCCTTACGAGGTCGTATTGATTGGTTGAAAGGCCTGAAAGAAAAC GTAGTTCTGGGGGGGATTATACCTGTTGGTACCGGATTCCAAAAATTTGTGCACCGTTAC CCACAAAACAAGAACCTTTATTTCGAAATTCAAAAAAAAAAACTATTTGCGTCGGAAATG AGAGATATTTTGTTTCTCCATACAGAATTAGTTTCTTCTGATTCTGACGTAACAAACAAT TTCTATGAGACATCAGAATCACCATTTACCCCATTTATATGA