Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	CAA33987
CDS Infomation	cds chromosome:IRGSP-1.0:Pt:22479:24527:1 gene:CAA33987 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rpoC1 description:RNA polymerase beta' subunit-1
Sequence	ATGATTGACCAATATAAACATCAACAACTTCAAATTGGACTCGTTTCCCCTCAACAAATA AAGGCTTGGGCTAACAAAACACTACCTAATGGGGAAGTCGTTGGCGAAGTCACAAGGCCC TCCACTTTTCATTATAAAACCGATAAACCAGAAAAAGATGGATTGTTTTGCGAAAGAATC TTTGGACCCATAAAAAGCAGAATTTGTGCTTGTGGAAATTCTCGAGCGAGCGGAGCTGAA AACGAAGACGAAAGATTTTGCCAAAAATGCGGAGTAGAATTTGTTGATTCTCGGATACGA AGATATCAAATGGGATACATCAAACTCGCATGTCCCGTGACTCATGTGTGGTATTTAAAA GGTCTTCCTAGTTATATCGCGAATCTTTTAGATAAACCCCTTAAGAAATTGGAGGGCCTA GTATATGGCGATTTCTCTTTTGCTAGGCCCAGTGCTAAAAAACCAACTTTCTTACGATTA CGAGGTTTATTCGAGGATGAAATTTCATCCTGTAACCATAGCATTTCCCCCTTTTTTTCT ACCCCAGGCTTTACAACATTTCGAAATCGGGAAATTGCGACAGGAGCAGGTGCTATTAGA GAACAATTAGCAGATTTGGATTTGCGAATTATTTTAGAGAATTCCTCGGTCGAATGGAAG GAATTAGAAGACGAGGGGTATAGTGGAGATGAATGGGAAGATAGAAAAAGACGAATAAGA AAAGTTTTTTTGATTAGACGCATGCAATTGGCGAAACATTTTATTCAAACAAATGTAGAA CCAGAATGGATGGTTTTGTGCTTATTACCAGTTCTTCCTCCCGAATTAAGACCCATTGTT TATAGGTCTGGGGATAAAGTAGTGACTTCGGATATTAATGAACTTTATAAGAGAGTTATC CGTCGGAACAACAATCTTGCCTATCTATTAAAAAGAAGTGAATTAGCGCCAGCAGATTTA GTAATGTGCCAGGAAAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAGTGGGTCC CGCGGGCAACCAACGAGGGATGGTCACAATAAAGTATACAAATCACTTTCAGATGTAATT GAAGGTAAAGAGGGGAGGTTTCGCGAAACTCTGCTTGGGAAACGGGTCGATTACTCGGGG CGTTCTGTCATTGTTGTGGGTCCTTCACTTTCATTACATCAATGTGGGTTACCTCTAGAG ATAGCAATAAAGCTTTTTCAGCTATTTGTAATTCGCGATTTAATCACGAAACGTGCTACT TCTAATGTTAGGATTGCTAAAAGGAAAATTTGGGAAAAGGAACCCATTGTATGGGAAATA CTTCAAGAAGTTATGAGGGGACATCCTGTACTGTTGAATAGAGCACCTACCCTGCATAGA TTAGGCATACAGGCTTTCCAACCCACTTTAGTAGAGGGGCGTACTATTTGTTTACACCCA TTAGTGTGTAAAGGTTTCAATGCAGACTTTGATGGGGATCAAATGGCTGTTCATCTACCT TTATCCTTGGAAGCTCAGGCGGAAGCTCGTTTACTTATGTTTTCTCATATGAATCTCCTA TCTCCCGCTATTGGGGATCCTATTTGCGTACCAACCCAAGACATGCTTATCGGACTTTAT GTATTAACGATTGGAAACCGTCGAGGTATTTGTGCAAATAGATATAATAGTTGCGGAAAC TATCCAAACCAAAAAGTAAATTACAATAATAATAATCCTAAGTATACGAAAGATAAAGAA TCTCTTTTTTCTAGTTCCTATGATGCACTGGGAGCTTATAGACAGAAACAAATCTGTTTA GACAGTCCCTTGTGGCTCCGATGGAAACTAGATCAACGCGTCATTGGGTTAAGAGAAGTT CCGATTGAAGTTCAATATGAATCTTTGGGGACTTATCGTGAGATTTATGCCCACTATCTA GTAGTGGGAAATAGAAAAAAGGAAATCCGTTCTATATACATTCGCACCACTCTTGGTCAT ATTTCTTTTTATAGAGAAATAGAGGAAGCCATACAAGGATTTAGTCAGGCCTATTCATAC ACTATCTAA

Peptide Sequence

PEP ID	CAA33987
PEP Infomation	pep chromosome:IRGSP-1.0:Pt:22479:24527:1 gene:CAA33987 transcript:CAA33987 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rpoC1 description:RNA polymerase beta' subunit-1
Sequence	MIDQYKHQQLQIGLVSPQQIKAWANKTLPNGEVVGEVTRPSTFHYKTDKPEKDGLFCERI FGPIKSRICACGNSRASGAENEDERFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK GLPSYIANLLDKPLKKLEGLVYGDFSFARPSAKKPTFLRLRGLFEDEISSCNHSISPFFS TPGFTTFRNREIATGAGAIREQLADLDLRIILENSSVEWKELEDEGYSGDEWEDRKRRIR KVFLIRRMQLAKHFIQTNVEPEWMVLCLLPVLPPELRPIVYRSGDKVVTSDINELYKRVI RRNNNLAYLLKRSELAPADLVMCQEKLVQEAVDTLLDSGSRGQPTRDGHNKVYKSLSDVI EGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLPLEIAIKLFQLFVIRDLITKRAT SNVRIAKRKIWEKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPTLVEGRTICLHP LVCKGFNADFDGDQMAVHLPLSLEAQAEARLLMFSHMNLLSPAIGDPICVPTQDMLIGLY VLTIGNRRGICANRYNSCGNYPNQKVNYNNNNPKYTKDKESLFSSSYDALGAYRQKQICL DSPLWLRWKLDQRVIGLREVPIEVQYESLGTYREIYAHYLVVGNRKKEIRSIYIRTTLGH ISFYREIEEAIQGFSQAYSYTI

Transcript Sequence

Transcript ID	CAA33987
Transcript Infomation	cdna chromosome:IRGSP-1.0:Pt:22479:24527:1 gene:CAA33987 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rpoC1 description:RNA polymerase beta' subunit-1
Sequence	ATGATTGACCAATATAAACATCAACAACTTCAAATTGGACTCGTTTCCCCTCAACAAATA AAGGCTTGGGCTAACAAAACACTACCTAATGGGGAAGTCGTTGGCGAAGTCACAAGGCCC TCCACTTTTCATTATAAAACCGATAAACCAGAAAAAGATGGATTGTTTTGCGAAAGAATC TTTGGACCCATAAAAAGCAGAATTTGTGCTTGTGGAAATTCTCGAGCGAGCGGAGCTGAA AACGAAGACGAAAGATTTTGCCAAAAATGCGGAGTAGAATTTGTTGATTCTCGGATACGA AGATATCAAATGGGATACATCAAACTCGCATGTCCCGTGACTCATGTGTGGTATTTAAAA GGTCTTCCTAGTTATATCGCGAATCTTTTAGATAAACCCCTTAAGAAATTGGAGGGCCTA GTATATGGCGATTTCTCTTTTGCTAGGCCCAGTGCTAAAAAACCAACTTTCTTACGATTA CGAGGTTTATTCGAGGATGAAATTTCATCCTGTAACCATAGCATTTCCCCCTTTTTTTCT ACCCCAGGCTTTACAACATTTCGAAATCGGGAAATTGCGACAGGAGCAGGTGCTATTAGA GAACAATTAGCAGATTTGGATTTGCGAATTATTTTAGAGAATTCCTCGGTCGAATGGAAG GAATTAGAAGACGAGGGGTATAGTGGAGATGAATGGGAAGATAGAAAAAGACGAATAAGA AAAGTTTTTTTGATTAGACGCATGCAATTGGCGAAACATTTTATTCAAACAAATGTAGAA CCAGAATGGATGGTTTTGTGCTTATTACCAGTTCTTCCTCCCGAATTAAGACCCATTGTT TATAGGTCTGGGGATAAAGTAGTGACTTCGGATATTAATGAACTTTATAAGAGAGTTATC CGTCGGAACAACAATCTTGCCTATCTATTAAAAAGAAGTGAATTAGCGCCAGCAGATTTA GTAATGTGCCAGGAAAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAGTGGGTCC CGCGGGCAACCAACGAGGGATGGTCACAATAAAGTATACAAATCACTTTCAGATGTAATT GAAGGTAAAGAGGGGAGGTTTCGCGAAACTCTGCTTGGGAAACGGGTCGATTACTCGGGG CGTTCTGTCATTGTTGTGGGTCCTTCACTTTCATTACATCAATGTGGGTTACCTCTAGAG ATAGCAATAAAGCTTTTTCAGCTATTTGTAATTCGCGATTTAATCACGAAACGTGCTACT TCTAATGTTAGGATTGCTAAAAGGAAAATTTGGGAAAAGGAACCCATTGTATGGGAAATA CTTCAAGAAGTTATGAGGGGACATCCTGTACTGTTGAATAGAGCACCTACCCTGCATAGA TTAGGCATACAGGCTTTCCAACCCACTTTAGTAGAGGGGCGTACTATTTGTTTACACCCA TTAGTGTGTAAAGGTTTCAATGCAGACTTTGATGGGGATCAAATGGCTGTTCATCTACCT TTATCCTTGGAAGCTCAGGCGGAAGCTCGTTTACTTATGTTTTCTCATATGAATCTCCTA TCTCCCGCTATTGGGGATCCTATTTGCGTACCAACCCAAGACATGCTTATCGGACTTTAT GTATTAACGATTGGAAACCGTCGAGGTATTTGTGCAAATAGATATAATAGTTGCGGAAAC TATCCAAACCAAAAAGTAAATTACAATAATAATAATCCTAAGTATACGAAAGATAAAGAA TCTCTTTTTTCTAGTTCCTATGATGCACTGGGAGCTTATAGACAGAAACAAATCTGTTTA GACAGTCCCTTGTGGCTCCGATGGAAACTAGATCAACGCGTCATTGGGTTAAGAGAAGTT CCGATTGAAGTTCAATATGAATCTTTGGGGACTTATCGTGAGATTTATGCCCACTATCTA GTAGTGGGAAATAGAAAAAAGGAAATCCGTTCTATATACATTCGCACCACTCTTGGTCAT ATTTCTTTTTATAGAGAAATAGAGGAAGCCATACAAGGATTTAGTCAGGCCTATTCATAC ACTATCTAA