Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	CAA33986
CDS Infomation	cds chromosome:IRGSP-1.0:Pt:19214:22441:1 gene:CAA33986 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rpoB description:RNA polymerase beta subunit
Sequence	ATGCTCCGGAATGGAAATGAGGGAATGTCCACAATACCCGGATTTAGTCAGATCCAATTC GAGGGATTTTGTAGGTTCATTAATCAAGGCTTGGCAGAAGAACTTGAGAAGTTTCCAACA ATTAAAGATCCAGATCACGAAATTTCATTTCAATTATTTGCGAAAGGATATCAATTGCTA GAACCTTCGATAAAAGAAAGGGATGCTGTGTATGAATCACTCACCTATTCTTCCGAATTA TACGTATCCGCGCGATTAATTTTTGGTTTCGATGTGCAAAAGCAAACCATTTCTATTGGA AACATTCCTATAATGAATTCCTTAGGAACCTTTATAATAAATGGAATATACCGAATTGTG ATCAATCAAATATTGCTAAGTCCTGGTATTTACTACCGCTCGGAATTAGACCATAAAGGA ATTTCTATCTACACCGGGACTATAATATCAGATTGGGGAGGAAGATCGGAATTAGCAATT GATAAAAAAGAAAGGATATGGGCTCGCGTGAGTAGAAAACAAAAGATATCTATTCTAGTT CTATCATCAGCTATGGGTTCAAATCTAAAAGAAATTCTAGATAATGTTTCCTACCCTGAA ATTTTCTTGTCTTTCCCTAATGCTAAGGAGAAGAAGAGGATTGAGTCAAAAGAAAAAGCT ATTTTGGAGTTTTATCAACAATTTGCTTGTGTAGGTGGGGACCTGGTATTTTCGGAATCC TTATGTGAGGAATTACAAAAGAAATTTTTTCAACAAAAATGTGAATTAGGAAGGATTGGT CGACGAAATATGAATCGAAGACTGAATCTTGATATACCTCAGAACAGCACCTTCTTGTTA CCGCGAGATGTATTGGCCGCTACGGATCATTTGATTGGAATGAAATTTGAAACGGGTATA CTTGACGATGACGATATGAATCACTTGAAAAATAAACGTATTCGTTCGGTTGCGGATCTG TTACAAGATCAATTCGGACTGGCTCTTGGTCGTTTACAACATGCGGTTCAAAAAACTATC CGTAGAGTATTCATACGTCAATCAAAACCGACTCCACAAACTTTGGTAACTCCAACTTCA ACCTCGATTTTATTAATAACTACTTACGAGACCTTCTTTGGTACATATCCCTTATCTCAA GTTTTTGATCAAACCAATCCATTGACACAAACGGTTCATGGGCGAAAAGTGAGTTGTTTG GGTCCTGGAGGATTGACGGGGAGAACTGCAAGTTTTCGGAGCCGAGATATCCATCCGAGT CACTATGGGCGTATTTGTCCAATTGACACGTCCGAAGGAATCAACGTTGGACTTACTGGA TCTTTAGCTATTCATGCGAGAATTGATCATTGGTGGGGATCCGTAGAGAGTCCTTTTTAT GAAATATCTGAGAAAGCAAAGAAAAAAAAAGAGAGACAGGTGGTTTATTTATCACCAAAT AGAGATGAGTATTATATGATAGCAGCAGGAAATTCTTTGTCCTTGAATCGGGGTATTCAG GAAGAACAGGTTGTTCCAGCTAGATACCGTCAAGAATTCCTGACTATTGCATGGGAACAG ATTCATGTTAGAAGTATTTTTCCTTTCCAATATTTTTCTATTGGGGGTTCTCTCATTCCT TTTATTGAGCATAATGATGCGAATCGAGCTTTAATGAGTTCTAATATGCAGCGCCAAGCA GTTCCGCTTTCTCGGTCCGAGAAGTGCATTGTTGGAACTGGATTGGAACGCCAAACAGCT CTAGATTCGAGGGTTTCTGTTATAGCCGAACGCGAGGGAAAGATCATTTCTACTAATAGT CACAAGATCCTTTTATCAAGTAGTGGGAAGACTATAAGTATTCCTTTAGTTACCCATCGG CGCTCTAACAAAAATACTTGTATGCACCAAAAACCTCGGGTTCCGCGGGGTAAATCCATT AAAAAAGGACAAATTTTAGCGGAGGGGGCTGCTACGGTTGGTGGGGAACTTGCTTTAGGA AAAAACGTATTAGTAGCTTATATGCCATGGGAAGGTTACAATTTTGAAGACGCAGTATTA ATTAGCGAACGTTTGGTATATGAGGATATTTATACTTCTTTTCACATCCGAAAATATGAA ATTCAGACGGATACAACAAGCCAAGGCTCCGCTGAAAAAATCACTAAAGAAATACCACAT CTAGAAGAACATTTACTCCGCAATTTGGACAGAAATGGAGTTGTGAAGTTGGGGTCCTGG GTAGAAACAGGCGATATTTTAGTAGGTAAATTAACGCCTCAGATAGCGAGCGAATCGTCC TATATCGCGGAAGCTGGATTATTACGGGCCATATTTGGTCTTGAGGTATCCACTTCAAAA GAAACTTCTCTCAAACTACCGATAGGTGGAAGAGGACGCGTTATCGATGTGAAATGGATC CAGAGGGATCCCCTCGACATAATGGTTCGTGTATATATTTTACAAAAACGCGAAATCAAA GTTGGGGATAAAGTAGCCGGAAGACACGGGAATAAGGGGATCATTTCCAAAATTTTGCCT AGGCAAGATATGCCCTATTTGCAAGATGGAACGCCTGTTGATATGGTTTTCAATCCCTTA GGAGTACCCTCCCGAATGAATGTGGGACAAATATTTGAAAGCTCGCTCGGATTAGCAGGG GATCTGCTAAAGAAACATTATAGAATAGCACCCTTTGATGAGAGATATGAGCAAGAGGCT TCAAGAAAACTTGTGTTTTCAGAATTATATGAAGCCAGTAAACAAACAAAAAATCCGTGG GTATTTGAACCCGAGTACCCGGGAAAAAGCAGAATATTTGATGGAAGAACAGGAGACCCC TTCGAACAGCCTGTTCTAATAGGGAAGTCCTATATCTTAAAATTAATTCATCAAGTTGAT GAGAAAATCCACGGACGCTCTACTGGGCCCTATTCACTTGTTACACAACAACCCGTTAGA GGAAGAGCCAAGCAAGGGGGACAACGAATAGGAGAAATGGAAGTTTGGGCTTTAGAAGGA TTTGGTGTTGCTCATATTTTACAAGAGATACTTACTTATAAATCTGATCATCTTATAGCT CGCCAAGAAATACTTAACGCTACGATCTGGGGAAAACGAGTACCTAATCACGAGGATCCT CCAGAATCTTTTCGAGTGCTTGTTCGAGAACTACGATCTTTGGCTCTAGAACTGAACCAT TTCCTTGTATCTCAGAAGAACTTCCAGGTTAATAGGGAAGAAGTTTGA

Peptide Sequence

PEP ID	CAA33986
PEP Infomation	pep chromosome:IRGSP-1.0:Pt:19214:22441:1 gene:CAA33986 transcript:CAA33986 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rpoB description:RNA polymerase beta subunit
Sequence	MLRNGNEGMSTIPGFSQIQFEGFCRFINQGLAEELEKFPTIKDPDHEISFQLFAKGYQLL EPSIKERDAVYESLTYSSELYVSARLIFGFDVQKQTISIGNIPIMNSLGTFIINGIYRIV INQILLSPGIYYRSELDHKGISIYTGTIISDWGGRSELAIDKKERIWARVSRKQKISILV LSSAMGSNLKEILDNVSYPEIFLSFPNAKEKKRIESKEKAILEFYQQFACVGGDLVFSES LCEELQKKFFQQKCELGRIGRRNMNRRLNLDIPQNSTFLLPRDVLAATDHLIGMKFETGI LDDDDMNHLKNKRIRSVADLLQDQFGLALGRLQHAVQKTIRRVFIRQSKPTPQTLVTPTS TSILLITTYETFFGTYPLSQVFDQTNPLTQTVHGRKVSCLGPGGLTGRTASFRSRDIHPS HYGRICPIDTSEGINVGLTGSLAIHARIDHWWGSVESPFYEISEKAKKKKERQVVYLSPN RDEYYMIAAGNSLSLNRGIQEEQVVPARYRQEFLTIAWEQIHVRSIFPFQYFSIGGSLIP FIEHNDANRALMSSNMQRQAVPLSRSEKCIVGTGLERQTALDSRVSVIAEREGKIISTNS HKILLSSSGKTISIPLVTHRRSNKNTCMHQKPRVPRGKSIKKGQILAEGAATVGGELALG KNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTDTTSQGSAEKITKEIPH LEEHLLRNLDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLLRAIFGLEVSTSK ETSLKLPIGGRGRVIDVKWIQRDPLDIMVRVYILQKREIKVGDKVAGRHGNKGIISKILP RQDMPYLQDGTPVDMVFNPLGVPSRMNVGQIFESSLGLAGDLLKKHYRIAPFDERYEQEA SRKLVFSELYEASKQTKNPWVFEPEYPGKSRIFDGRTGDPFEQPVLIGKSYILKLIHQVD EKIHGRSTGPYSLVTQQPVRGRAKQGGQRIGEMEVWALEGFGVAHILQEILTYKSDHLIA RQEILNATIWGKRVPNHEDPPESFRVLVRELRSLALELNHFLVSQKNFQVNREEV

Transcript Sequence

Transcript ID	CAA33986
Transcript Infomation	cdna chromosome:IRGSP-1.0:Pt:19214:22441:1 gene:CAA33986 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rpoB description:RNA polymerase beta subunit
Sequence	ATGCTCCGGAATGGAAATGAGGGAATGTCCACAATACCCGGATTTAGTCAGATCCAATTC GAGGGATTTTGTAGGTTCATTAATCAAGGCTTGGCAGAAGAACTTGAGAAGTTTCCAACA ATTAAAGATCCAGATCACGAAATTTCATTTCAATTATTTGCGAAAGGATATCAATTGCTA GAACCTTCGATAAAAGAAAGGGATGCTGTGTATGAATCACTCACCTATTCTTCCGAATTA TACGTATCCGCGCGATTAATTTTTGGTTTCGATGTGCAAAAGCAAACCATTTCTATTGGA AACATTCCTATAATGAATTCCTTAGGAACCTTTATAATAAATGGAATATACCGAATTGTG ATCAATCAAATATTGCTAAGTCCTGGTATTTACTACCGCTCGGAATTAGACCATAAAGGA ATTTCTATCTACACCGGGACTATAATATCAGATTGGGGAGGAAGATCGGAATTAGCAATT GATAAAAAAGAAAGGATATGGGCTCGCGTGAGTAGAAAACAAAAGATATCTATTCTAGTT CTATCATCAGCTATGGGTTCAAATCTAAAAGAAATTCTAGATAATGTTTCCTACCCTGAA ATTTTCTTGTCTTTCCCTAATGCTAAGGAGAAGAAGAGGATTGAGTCAAAAGAAAAAGCT ATTTTGGAGTTTTATCAACAATTTGCTTGTGTAGGTGGGGACCTGGTATTTTCGGAATCC TTATGTGAGGAATTACAAAAGAAATTTTTTCAACAAAAATGTGAATTAGGAAGGATTGGT CGACGAAATATGAATCGAAGACTGAATCTTGATATACCTCAGAACAGCACCTTCTTGTTA CCGCGAGATGTATTGGCCGCTACGGATCATTTGATTGGAATGAAATTTGAAACGGGTATA CTTGACGATGACGATATGAATCACTTGAAAAATAAACGTATTCGTTCGGTTGCGGATCTG TTACAAGATCAATTCGGACTGGCTCTTGGTCGTTTACAACATGCGGTTCAAAAAACTATC CGTAGAGTATTCATACGTCAATCAAAACCGACTCCACAAACTTTGGTAACTCCAACTTCA ACCTCGATTTTATTAATAACTACTTACGAGACCTTCTTTGGTACATATCCCTTATCTCAA GTTTTTGATCAAACCAATCCATTGACACAAACGGTTCATGGGCGAAAAGTGAGTTGTTTG GGTCCTGGAGGATTGACGGGGAGAACTGCAAGTTTTCGGAGCCGAGATATCCATCCGAGT CACTATGGGCGTATTTGTCCAATTGACACGTCCGAAGGAATCAACGTTGGACTTACTGGA TCTTTAGCTATTCATGCGAGAATTGATCATTGGTGGGGATCCGTAGAGAGTCCTTTTTAT GAAATATCTGAGAAAGCAAAGAAAAAAAAAGAGAGACAGGTGGTTTATTTATCACCAAAT AGAGATGAGTATTATATGATAGCAGCAGGAAATTCTTTGTCCTTGAATCGGGGTATTCAG GAAGAACAGGTTGTTCCAGCTAGATACCGTCAAGAATTCCTGACTATTGCATGGGAACAG ATTCATGTTAGAAGTATTTTTCCTTTCCAATATTTTTCTATTGGGGGTTCTCTCATTCCT TTTATTGAGCATAATGATGCGAATCGAGCTTTAATGAGTTCTAATATGCAGCGCCAAGCA GTTCCGCTTTCTCGGTCCGAGAAGTGCATTGTTGGAACTGGATTGGAACGCCAAACAGCT CTAGATTCGAGGGTTTCTGTTATAGCCGAACGCGAGGGAAAGATCATTTCTACTAATAGT CACAAGATCCTTTTATCAAGTAGTGGGAAGACTATAAGTATTCCTTTAGTTACCCATCGG CGCTCTAACAAAAATACTTGTATGCACCAAAAACCTCGGGTTCCGCGGGGTAAATCCATT AAAAAAGGACAAATTTTAGCGGAGGGGGCTGCTACGGTTGGTGGGGAACTTGCTTTAGGA AAAAACGTATTAGTAGCTTATATGCCATGGGAAGGTTACAATTTTGAAGACGCAGTATTA ATTAGCGAACGTTTGGTATATGAGGATATTTATACTTCTTTTCACATCCGAAAATATGAA ATTCAGACGGATACAACAAGCCAAGGCTCCGCTGAAAAAATCACTAAAGAAATACCACAT CTAGAAGAACATTTACTCCGCAATTTGGACAGAAATGGAGTTGTGAAGTTGGGGTCCTGG GTAGAAACAGGCGATATTTTAGTAGGTAAATTAACGCCTCAGATAGCGAGCGAATCGTCC TATATCGCGGAAGCTGGATTATTACGGGCCATATTTGGTCTTGAGGTATCCACTTCAAAA GAAACTTCTCTCAAACTACCGATAGGTGGAAGAGGACGCGTTATCGATGTGAAATGGATC CAGAGGGATCCCCTCGACATAATGGTTCGTGTATATATTTTACAAAAACGCGAAATCAAA GTTGGGGATAAAGTAGCCGGAAGACACGGGAATAAGGGGATCATTTCCAAAATTTTGCCT AGGCAAGATATGCCCTATTTGCAAGATGGAACGCCTGTTGATATGGTTTTCAATCCCTTA GGAGTACCCTCCCGAATGAATGTGGGACAAATATTTGAAAGCTCGCTCGGATTAGCAGGG GATCTGCTAAAGAAACATTATAGAATAGCACCCTTTGATGAGAGATATGAGCAAGAGGCT TCAAGAAAACTTGTGTTTTCAGAATTATATGAAGCCAGTAAACAAACAAAAAATCCGTGG GTATTTGAACCCGAGTACCCGGGAAAAAGCAGAATATTTGATGGAAGAACAGGAGACCCC TTCGAACAGCCTGTTCTAATAGGGAAGTCCTATATCTTAAAATTAATTCATCAAGTTGAT GAGAAAATCCACGGACGCTCTACTGGGCCCTATTCACTTGTTACACAACAACCCGTTAGA GGAAGAGCCAAGCAAGGGGGACAACGAATAGGAGAAATGGAAGTTTGGGCTTTAGAAGGA TTTGGTGTTGCTCATATTTTACAAGAGATACTTACTTATAAATCTGATCATCTTATAGCT CGCCAAGAAATACTTAACGCTACGATCTGGGGAAAACGAGTACCTAATCACGAGGATCCT CCAGAATCTTTTCGAGTGCTTGTTCGAGAACTACGATCTTTGGCTCTAGAACTGAACCAT TTCCTTGTATCTCAGAAGAACTTCCAGGTTAATAGGGAAGAAGTTTGA