Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	CAA33979
CDS Infomation	cds chromosome:IRGSP-1.0:Pt:74330:75343:-1 gene:CAA33979 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rpoA description:RNA polymerase alpha subunit
Sequence	ATGGTTCGAGAGGAGGTAGCAGGATCCACTCAAACACTACAGTGGAAGTGTGTTGAATCA AGAGTAGATAGTAAGCGTCTTTATTATGGTCGTTTCATTCTGTCCCCGCTTAGAAAAGGT CAAGCGGATACCGTTGGTATTGCCTTGCGAAGAGCTTTACTTGGAGAAACAGAAGGAACA TGTATCACACATGCAAAATTTGGGAGCGTGCCGCACGAATATTCTACAATAGCAGGTATT GAAGAATCGGTACAAGAAATTTTACTAAATTTGAAAGAAATTGTATTGAGAAGTAATCTC TATGGAGTTAGAACCGCATCAATTTGCGTCAAAGGTCCTAGATACATAACTGCCCAAGAT ATTATCTTACCGCCTTCCGTAGAAATCGTTGATACGGCACAACCTATAGCTAACTTGACA GAACCCACGGATTTCCGTATTGAGTTACGGATCAAGAGAGATCGCGGATATCACACGGAA GTCAGAAAGAACACTCAAGATGGAAGTTATCCTATAGATGCTGTATCCATGCCTGTTCGA AATGTGAATTATAGTATTTTTGCTTGTGGGAATGGAAATGCAAAATATGAGATACTTTTT CTAGAAATATGGACCAATGGAAGTTTAACCCCTAAGGAAGCGCTTTATGAGGCTTCTCGT AATTTGATTGATTTATTTCTTCCTTTTCTTCACACGGAGGAAGAGGGTACTCGTTTCCAA GAAAATAAAAACAGGTTTACTTCCCCCCTTTTAAGCTTTCAAAAAAGATTAACTAATCTA AAGAAAAACAAAAAAAGAATTCCATTGAATTGTATTTTTATTGATCAATTAGAACTGCCT TCTAGAACGTATAATTGTCTCAAAAGGGCCAATATCCATACACTATTGGACCTTTTGAGT AAGACGGAAGAAGATCTGATGAGAATTGACAGTTTTCGTATGCAAGATGGAAAACAGATA TGGGACACTCTAGAGAAGCATCTCCCAATGGATTTACCTAAGAATAAGTTCTAG

Peptide Sequence

PEP ID	CAA33979
PEP Infomation	pep chromosome:IRGSP-1.0:Pt:74330:75343:-1 gene:CAA33979 transcript:CAA33979 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rpoA description:RNA polymerase alpha subunit
Sequence	MVREEVAGSTQTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTVGIALRRALLGETEGT CITHAKFGSVPHEYSTIAGIEESVQEILLNLKEIVLRSNLYGVRTASICVKGPRYITAQD IILPPSVEIVDTAQPIANLTEPTDFRIELRIKRDRGYHTEVRKNTQDGSYPIDAVSMPVR NVNYSIFACGNGNAKYEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHTEEEGTRFQ ENKNRFTSPLLSFQKRLTNLKKNKKRIPLNCIFIDQLELPSRTYNCLKRANIHTLLDLLS KTEEDLMRIDSFRMQDGKQIWDTLEKHLPMDLPKNKF

Transcript Sequence

Transcript ID	CAA33979
Transcript Infomation	cdna chromosome:IRGSP-1.0:Pt:74330:75343:-1 gene:CAA33979 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rpoA description:RNA polymerase alpha subunit
Sequence	ATGGTTCGAGAGGAGGTAGCAGGATCCACTCAAACACTACAGTGGAAGTGTGTTGAATCA AGAGTAGATAGTAAGCGTCTTTATTATGGTCGTTTCATTCTGTCCCCGCTTAGAAAAGGT CAAGCGGATACCGTTGGTATTGCCTTGCGAAGAGCTTTACTTGGAGAAACAGAAGGAACA TGTATCACACATGCAAAATTTGGGAGCGTGCCGCACGAATATTCTACAATAGCAGGTATT GAAGAATCGGTACAAGAAATTTTACTAAATTTGAAAGAAATTGTATTGAGAAGTAATCTC TATGGAGTTAGAACCGCATCAATTTGCGTCAAAGGTCCTAGATACATAACTGCCCAAGAT ATTATCTTACCGCCTTCCGTAGAAATCGTTGATACGGCACAACCTATAGCTAACTTGACA GAACCCACGGATTTCCGTATTGAGTTACGGATCAAGAGAGATCGCGGATATCACACGGAA GTCAGAAAGAACACTCAAGATGGAAGTTATCCTATAGATGCTGTATCCATGCCTGTTCGA AATGTGAATTATAGTATTTTTGCTTGTGGGAATGGAAATGCAAAATATGAGATACTTTTT CTAGAAATATGGACCAATGGAAGTTTAACCCCTAAGGAAGCGCTTTATGAGGCTTCTCGT AATTTGATTGATTTATTTCTTCCTTTTCTTCACACGGAGGAAGAGGGTACTCGTTTCCAA GAAAATAAAAACAGGTTTACTTCCCCCCTTTTAAGCTTTCAAAAAAGATTAACTAATCTA AAGAAAAACAAAAAAAGAATTCCATTGAATTGTATTTTTATTGATCAATTAGAACTGCCT TCTAGAACGTATAATTGTCTCAAAAGGGCCAATATCCATACACTATTGGACCTTTTGAGT AAGACGGAAGAAGATCTGATGAGAATTGACAGTTTTCGTATGCAAGATGGAAAACAGATA TGGGACACTCTAGAGAAGCATCTCCCAATGGATTTACCTAAGAATAAGTTCTAG