Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	CAA33973
CDS Infomation	cds chromosome:IRGSP-1.0:Pt:68799:70325:1 gene:CAA33973 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:psbB description:PSII 47kDa protein
Sequence	ATGGGTTTGCCTTGGTATCGTGTTCATACTGTCGTATTGAATGATCCGGGTCGATTGCTT TCGGTGCATATAATGCACACAGCTCTAGTTTCTGGTTGGGCTGGCTCGATGGCTTTATAC GAATTAGCGGTTTTTGATCCCTCTGATCCTGTTCTGGATCCAATGTGGAGACAAGGTATG TTCGTCATTCCTTTCATGACTCGTTTAGGAATAACCAATTCGTGGGGTGGTTGGAGTATT TCAGGAGGAACTGTAACGAATCCGGGTATTTGGAGTTATGAAGGCGTGGCAGGGGCGCAT ATTGTGTTTTCTGGCTTGTGTTTCTTGGCAGCTATCTGGCATTGGGTATATTGGGACCTC GAAATATTCTGTGATGAGCGGACGGGAAAACCTTCTTTGGATTTGCCCAAGATCTTTGGA ATTCATTTATTTCTTGCAGGGGTGGCTTGCTTTGGCTTTGGCGCATTTCATGTAACTGGT TTGTATGGTCCTGGGATATGGGTGTCTGATCCTTATGGACTAACTGGAAAAGTACAAGCT GTAAATCCGGCGTGGGGTGCAGAAGGTTTTGATCCTTTTGTTCCGGGGGGAATAGCTTCT CATCATATTGCTGCGGGTACATTGGGCATATTAGCGGGCCTATTCCATCTTAGTGTCCGT CCACCTCAACGTCTATACAAAGGATTACGTATGGGCAATATTGAAACTGTACTTTCCAGT AGTATCGCTGCTGTTTTTTTTGCAGCTTTCGTAGTTGCCGGAACTATGTGGTATGGGTCA GCAACTACCCCAATTGAATTGTTTGGGCCTACTCGTTATCAGTGGGATCAGGGATACTTT CAGCAAGAAATATATCGAAGAGTTAGTGATGGGTTAGCCGAAAATCTCAGTTTATCAGAA GCTTGGTCTAAAATTCCCGAAAAATTAGCCTTTTATGATTATATTGGTAATAATCCGGCA AAGGGGGGATTATTCAGAGCAGGCTCAATGGACAATGGGGATGGAATAGCTGTTGGATGG TTAGGACATCCTATCTTTAGAGATAAAGAAGGGCGCGAACTTTTTGTACGCCGTATGCCT ACTTTTTTTGAAACATTTCCGGTTGTTTTGGTAGATGAAGAGGGAATTGTGAGAGCGGAC GTTCCTTTTAGAAGAGCAGAATCCAAATATAGTGTTGAACAAGTAGGCGTAACGGTGGAG TTCTATGGTGGCGAACTTAATGGAGTAAGTTATTCTGATCCTGCTACTGTAAAAAAATAT GCGAGGCGTTCCCAATTAGGGGAAATTTTTGAATTAGATCGGGCTACTTTGAAATCAGAT GGTGTTTTTCGCAGCAGTCCAAGGGGTTGGTTCACTTTTGGTCATGCTACCTTTGCTTTG CTCTTCTTTTTCGGACACATTTGGCATGGGGCTAGAACCTTGTTCGCAGATGTTTTTGCT GGTATTGATCCAGACTTAGATGCTCAAGTGGAATTTGGAGCAATCCAAAAACGTGGAGAT CCAACTACAGGGAGACAGCCAGTCTGA

Peptide Sequence

PEP ID	CAA33973
PEP Infomation	pep chromosome:IRGSP-1.0:Pt:68799:70325:1 gene:CAA33973 transcript:CAA33973 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:psbB description:PSII 47kDa protein
Sequence	MGLPWYRVHTVVLNDPGRLLSVHIMHTALVSGWAGSMALYELAVFDPSDPVLDPMWRQGM FVIPFMTRLGITNSWGGWSISGGTVTNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDL EIFCDERTGKPSLDLPKIFGIHLFLAGVACFGFGAFHVTGLYGPGIWVSDPYGLTGKVQA VNPAWGAEGFDPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSS SIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRVSDGLAENLSLSE AWSKIPEKLAFYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHPIFRDKEGRELFVRRMP TFFETFPVVLVDEEGIVRADVPFRRAESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKY ARRSQLGEIFELDRATLKSDGVFRSSPRGWFTFGHATFALLFFFGHIWHGARTLFADVFA GIDPDLDAQVEFGAIQKRGDPTTGRQPV

Transcript Sequence

Transcript ID	CAA33973
Transcript Infomation	cdna chromosome:IRGSP-1.0:Pt:68799:70325:1 gene:CAA33973 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:psbB description:PSII 47kDa protein
Sequence	ATGGGTTTGCCTTGGTATCGTGTTCATACTGTCGTATTGAATGATCCGGGTCGATTGCTT TCGGTGCATATAATGCACACAGCTCTAGTTTCTGGTTGGGCTGGCTCGATGGCTTTATAC GAATTAGCGGTTTTTGATCCCTCTGATCCTGTTCTGGATCCAATGTGGAGACAAGGTATG TTCGTCATTCCTTTCATGACTCGTTTAGGAATAACCAATTCGTGGGGTGGTTGGAGTATT TCAGGAGGAACTGTAACGAATCCGGGTATTTGGAGTTATGAAGGCGTGGCAGGGGCGCAT ATTGTGTTTTCTGGCTTGTGTTTCTTGGCAGCTATCTGGCATTGGGTATATTGGGACCTC GAAATATTCTGTGATGAGCGGACGGGAAAACCTTCTTTGGATTTGCCCAAGATCTTTGGA ATTCATTTATTTCTTGCAGGGGTGGCTTGCTTTGGCTTTGGCGCATTTCATGTAACTGGT TTGTATGGTCCTGGGATATGGGTGTCTGATCCTTATGGACTAACTGGAAAAGTACAAGCT GTAAATCCGGCGTGGGGTGCAGAAGGTTTTGATCCTTTTGTTCCGGGGGGAATAGCTTCT CATCATATTGCTGCGGGTACATTGGGCATATTAGCGGGCCTATTCCATCTTAGTGTCCGT CCACCTCAACGTCTATACAAAGGATTACGTATGGGCAATATTGAAACTGTACTTTCCAGT AGTATCGCTGCTGTTTTTTTTGCAGCTTTCGTAGTTGCCGGAACTATGTGGTATGGGTCA GCAACTACCCCAATTGAATTGTTTGGGCCTACTCGTTATCAGTGGGATCAGGGATACTTT CAGCAAGAAATATATCGAAGAGTTAGTGATGGGTTAGCCGAAAATCTCAGTTTATCAGAA GCTTGGTCTAAAATTCCCGAAAAATTAGCCTTTTATGATTATATTGGTAATAATCCGGCA AAGGGGGGATTATTCAGAGCAGGCTCAATGGACAATGGGGATGGAATAGCTGTTGGATGG TTAGGACATCCTATCTTTAGAGATAAAGAAGGGCGCGAACTTTTTGTACGCCGTATGCCT ACTTTTTTTGAAACATTTCCGGTTGTTTTGGTAGATGAAGAGGGAATTGTGAGAGCGGAC GTTCCTTTTAGAAGAGCAGAATCCAAATATAGTGTTGAACAAGTAGGCGTAACGGTGGAG TTCTATGGTGGCGAACTTAATGGAGTAAGTTATTCTGATCCTGCTACTGTAAAAAAATAT GCGAGGCGTTCCCAATTAGGGGAAATTTTTGAATTAGATCGGGCTACTTTGAAATCAGAT GGTGTTTTTCGCAGCAGTCCAAGGGGTTGGTTCACTTTTGGTCATGCTACCTTTGCTTTG CTCTTCTTTTTCGGACACATTTGGCATGGGGCTAGAACCTTGTTCGCAGATGTTTTTGCT GGTATTGATCCAGACTTAGATGCTCAAGTGGAATTTGGAGCAATCCAAAAACGTGGAGAT CCAACTACAGGGAGACAGCCAGTCTGA