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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

CAA33958
CDS Infomation

cds chromosome:IRGSP-1.0:Pt:57702:58259:1 gene:CAA33958 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ycf4 description:Photosystem I assembly protein Ycf4 [Source:UniProtKB/Swiss-Prot;Acc:P0C515]
Sequence

ATGAATTGGCGATCAGAACACATATGGATAGAACTTCTAAAAGGTTCTCGAAAAAGAGGT
AATTTTTTCTGGGCCTGTATTCTTTTTCTAGGTTCACTAGGATTCTTAGCGGTTGGGGCT
TCCAGTTATCTTGGTAAGAATATTATATCTGTACTTCCATCTCAACAAATTCTTTTTTTT
CCACAGGGGGTCGTGATGTCTTTCTACGGAATCGCAGGCCTATTCATTAGCGCTTACTTG
TGGTGCACTATTTTGTGGAATGTAGGCAGTGGTTATGACCGATTCGATAGAAAAGAGGGA
GTAGTGTGCATTTTTCGTTGGGGATTCCCTGGAATAAAACGTCGCGTCTTTCTTCGATTC
CTTATGCGGGATATCCAATCAATTAGAATTCAGGTTAAAGAAGGTCTTTTTCCTCGTCGT
ATCCTTTATATGGAAATCCGGGGCCAGGGGGCCATTCCCTTGACTCGTACTGATGAGAAG
TTTTTTACTCCACGAGAAATTGAACAAAAAGCTGCCGAATTGGCTTATTTCTTGCGCATA
CCAATGGAAGTATTTTGA

Peptide Sequence

PEP ID

CAA33958
PEP Infomation

pep chromosome:IRGSP-1.0:Pt:57702:58259:1 gene:CAA33958 transcript:CAA33958 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ycf4 description:Photosystem I assembly protein Ycf4 [Source:UniProtKB/Swiss-Prot;Acc:P0C515]
Sequence

MNWRSEHIWIELLKGSRKRGNFFWACILFLGSLGFLAVGASSYLGKNIISVLPSQQILFF
PQGVVMSFYGIAGLFISAYLWCTILWNVGSGYDRFDRKEGVVCIFRWGFPGIKRRVFLRF
LMRDIQSIRIQVKEGLFPRRILYMEIRGQGAIPLTRTDEKFFTPREIEQKAAELAYFLRI
PMEVF

Transcript Sequence

Transcript ID

CAA33958
Transcript Infomation

cdna chromosome:IRGSP-1.0:Pt:57702:58259:1 gene:CAA33958 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ycf4 description:Photosystem I assembly protein Ycf4 [Source:UniProtKB/Swiss-Prot;Acc:P0C515]
Sequence

ATGAATTGGCGATCAGAACACATATGGATAGAACTTCTAAAAGGTTCTCGAAAAAGAGGT
AATTTTTTCTGGGCCTGTATTCTTTTTCTAGGTTCACTAGGATTCTTAGCGGTTGGGGCT
TCCAGTTATCTTGGTAAGAATATTATATCTGTACTTCCATCTCAACAAATTCTTTTTTTT
CCACAGGGGGTCGTGATGTCTTTCTACGGAATCGCAGGCCTATTCATTAGCGCTTACTTG
TGGTGCACTATTTTGTGGAATGTAGGCAGTGGTTATGACCGATTCGATAGAAAAGAGGGA
GTAGTGTGCATTTTTCGTTGGGGATTCCCTGGAATAAAACGTCGCGTCTTTCTTCGATTC
CTTATGCGGGATATCCAATCAATTAGAATTCAGGTTAAAGAAGGTCTTTTTCCTCGTCGT
ATCCTTTATATGGAAATCCGGGGCCAGGGGGCCATTCCCTTGACTCGTACTGATGAGAAG
TTTTTTACTCCACGAGAAATTGAACAAAAAGCTGCCGAATTGGCTTATTTCTTGCGCATA
CCAATGGAAGTATTTTGA