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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

CAA33909
CDS Infomation

cds chromosome:IRGSP-1.0:Pt:110000:110536:-1 gene:CAA33909 gene_biotype:protein_coding transcript_biotype:protein_coding description:18kDa protein related to a subunit of NADH dehydroghenase
Sequence

ATGTTCCCTATGGTAACTGGGTTCATGGGTCAACAAACAATACGCGCAGCAAGGTACATT
GGTCAAAGTTTCATAATTACCTTATCCCACACAAATCGTTTACCTATAACGATTCACTAC
CCCTATGAAAAATCAATTACATCGGAGCGTTTCCGGGGGCGAATCCACTTTGAATTTGAT
AAATGTATTGCTTGTGAAGTATGTGTTCGCGTATGCCCTATAGATCTACCTCTTGTGGAT
TGGAGATTTGAAAAGGATATTAAAAGGAAACAATTGCTTAATTATAGTATTGATTTCGGA
GTTTGTATATTTTGTGGTAATTGTGTTGAGTACTGTCCGACAAACTGTTTATCAATGACT
GAAGAATATGAACTTTCTACTTATGATCGTCATGAATTGAATTACAATCAAATTGCTTTG
AGTCGGTTACCAATCTCCATAATGGGAGATTACACAATTCAAACAATTAGGAATTCAACT
CAAAGTAAAATAGACGAAGAAAAATCTTGGAATTCAAGAACGATTACTGATTACTAG

Peptide Sequence

PEP ID

CAA33909
PEP Infomation

pep chromosome:IRGSP-1.0:Pt:110000:110536:-1 gene:CAA33909 transcript:CAA33909 gene_biotype:protein_coding transcript_biotype:protein_coding description:18kDa protein related to a subunit of NADH dehydroghenase
Sequence

MFPMVTGFMGQQTIRAARYIGQSFIITLSHTNRLPITIHYPYEKSITSERFRGRIHFEFD
KCIACEVCVRVCPIDLPLVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMT
EEYELSTYDRHELNYNQIALSRLPISIMGDYTIQTIRNSTQSKIDEEKSWNSRTITDY

Transcript Sequence

Transcript ID

CAA33909
Transcript Infomation

cdna chromosome:IRGSP-1.0:Pt:110000:110536:-1 gene:CAA33909 gene_biotype:protein_coding transcript_biotype:protein_coding description:18kDa protein related to a subunit of NADH dehydroghenase
Sequence

ATGTTCCCTATGGTAACTGGGTTCATGGGTCAACAAACAATACGCGCAGCAAGGTACATT
GGTCAAAGTTTCATAATTACCTTATCCCACACAAATCGTTTACCTATAACGATTCACTAC
CCCTATGAAAAATCAATTACATCGGAGCGTTTCCGGGGGCGAATCCACTTTGAATTTGAT
AAATGTATTGCTTGTGAAGTATGTGTTCGCGTATGCCCTATAGATCTACCTCTTGTGGAT
TGGAGATTTGAAAAGGATATTAAAAGGAAACAATTGCTTAATTATAGTATTGATTTCGGA
GTTTGTATATTTTGTGGTAATTGTGTTGAGTACTGTCCGACAAACTGTTTATCAATGACT
GAAGAATATGAACTTTCTACTTATGATCGTCATGAATTGAATTACAATCAAATTGCTTTG
AGTCGGTTACCAATCTCCATAATGGGAGATTACACAATTCAAACAATTAGGAATTCAACT
CAAAGTAAAATAGACGAAGAAAAATCTTGGAATTCAAGAACGATTACTGATTACTAG