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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g100110.1.1
CDS Infomation

Extensin-like protein Ext1 (AHRD V3.3 *** Q8VWM5_SOLLC)
Sequence

ATGGGAAGCCAAATGAAGAAGCAATTTGCTTGTGCTTTGGCATTTTTCTTGATTGCCTCA
TGCACTATGGCATATTCACCTTATGAATCATCAGATTCAACATACAATAAAGTAACAACC
AAAGAAGTCAAAAGTGAAGACTTCAAGGTACCCTCAGTGTCGGAAAAGGAATATAAGGAG
TCATCTTTTCCAAAATTTGACTATTTTAAGAAGCCATCAGTTTCAGATGATATCTATAAA
AAGGAGTCATATATTCCCGAATCTAAAGAGTCATTTTTTCCAAAATTTGACTACTTTAAG
AAGCCGTCAGTTCAAGAAAACGACTACAAGAAGGCGTCATATGTTCCAGAGGAACCCTCA
AAGGCTAAACCAGAATATAAGGAGTCATTTTTACCAAAATTTGACTACTTTAAGAAGCCA
TTAGTTCAAGAAGAGGACTCCAAGAAGGCGTCCTATGTTCCAGAGGTACCCTCAAAGGCT
AAACCAGAATATAAGGAGTCATTTTTACCAAAATTTGACTACTTTAAGAAGCCATCAGTT
TCAGAAGATAGCTACAAAAAGGAGTCATATGTTCCAGAGAAACCCTCAATGCCTAAGGAA
GAATACAAGGTACCTGTTTTGCTTAAGAATGACTACTTTAAGAAGTCACCAGTTCCAGAA
GATAGCTACAAAAAGGTGTCATATGTTCCAAAGGTGCCCTCAGTGCCTAAAGAAGAATAC
AAGGTGCCTTCTTTATCAAAAAATGATTACTACAAGAAGCCATCAGTTTCAGAAGACAAC
TACAAAAAAGTATCATATGTTCCAAAGGTGCCCTCAGTGCCTAAAGAAGAATACAAGGTG
CCTTCTTTGTCAAAGAATGACTATTACAAGAAGCTAACAGTTCCAGAAGATAACTACAAG
AAGGTGTCATACGTTTCAAAGGTACCCTCGCTTGCTAAACCCGAATACAAGGTGCCTTCT
TTGCCAAAGAATGATTACTACAAGAAGCCATCAATTCCAGAAGATAAATACAATAAGGTG
TCATCTGTTCCAGAAGTACCCTCAGTGCCTAAACCAGAATACAAGGTGCCTTCTTTGCCA
AAGAATGCTTACTACAAGAAGCCATCAATTCCAGAAGATAAATACAATAAGGTGTCATCT
GTTCCAGAAGTACCCTCAGTGCCTAAACCAGAATACAAGGTGCCGTCTCTGCCCAAAAAT
GACTACGTCAAGAAACCATCACCTTCTCCATCACCACCACCTCCATATTATTAA

Peptide Sequence

PEP ID

Solyc12g100110.1.1
PEP Infomation

Extensin-like protein Ext1 (AHRD V3.3 *** Q8VWM5_SOLLC)
Sequence

MGSQMKKQFACALAFFLIASCTMAYSPYESSDSTYNKVTTKEVKSEDFKVPSVSEKEYKE
SSFPKFDYFKKPSVSDDIYKKESYIPESKESFFPKFDYFKKPSVQENDYKKASYVPEEPS
KAKPEYKESFLPKFDYFKKPLVQEEDSKKASYVPEVPSKAKPEYKESFLPKFDYFKKPSV
SEDSYKKESYVPEKPSMPKEEYKVPVLLKNDYFKKSPVPEDSYKKVSYVPKVPSVPKEEY
KVPSLSKNDYYKKPSVSEDNYKKVSYVPKVPSVPKEEYKVPSLSKNDYYKKLTVPEDNYK
KVSYVSKVPSLAKPEYKVPSLPKNDYYKKPSIPEDKYNKVSSVPEVPSVPKPEYKVPSLP
KNAYYKKPSIPEDKYNKVSSVPEVPSVPKPEYKVPSLPKNDYVKKPSPSPSPPPPYY*

Transcript Sequence

Transcript ID

Solyc12g100110.1.1
Transcript Infomation

Extensin-like protein Ext1 (AHRD V3.3 *** Q8VWM5_SOLLC)
Sequence

ATGGGAAGCCAAATGAAGAAGCAATTTGCTTGTGCTTTGGCATTTTTCTTGATTGCCTCA
TGCACTATGGCATATTCACCTTATGAATCATCAGATTCAACATACAATAAAGTAACAACC
AAAGAAGTCAAAAGTGAAGACTTCAAGGTACCCTCAGTGTCGGAAAAGGAATATAAGGAG
TCATCTTTTCCAAAATTTGACTATTTTAAGAAGCCATCAGTTTCAGATGATATCTATAAA
AAGGAGTCATATATTCCCGAATCTAAAGAGTCATTTTTTCCAAAATTTGACTACTTTAAG
AAGCCGTCAGTTCAAGAAAACGACTACAAGAAGGCGTCATATGTTCCAGAGGAACCCTCA
AAGGCTAAACCAGAATATAAGGAGTCATTTTTACCAAAATTTGACTACTTTAAGAAGCCA
TTAGTTCAAGAAGAGGACTCCAAGAAGGCGTCCTATGTTCCAGAGGTACCCTCAAAGGCT
AAACCAGAATATAAGGAGTCATTTTTACCAAAATTTGACTACTTTAAGAAGCCATCAGTT
TCAGAAGATAGCTACAAAAAGGAGTCATATGTTCCAGAGAAACCCTCAATGCCTAAGGAA
GAATACAAGGTACCTGTTTTGCTTAAGAATGACTACTTTAAGAAGTCACCAGTTCCAGAA
GATAGCTACAAAAAGGTGTCATATGTTCCAAAGGTGCCCTCAGTGCCTAAAGAAGAATAC
AAGGTGCCTTCTTTATCAAAAAATGATTACTACAAGAAGCCATCAGTTTCAGAAGACAAC
TACAAAAAAGTATCATATGTTCCAAAGGTGCCCTCAGTGCCTAAAGAAGAATACAAGGTG
CCTTCTTTGTCAAAGAATGACTATTACAAGAAGCTAACAGTTCCAGAAGATAACTACAAG
AAGGTGTCATACGTTTCAAAGGTACCCTCGCTTGCTAAACCCGAATACAAGGTGCCTTCT
TTGCCAAAGAATGATTACTACAAGAAGCCATCAATTCCAGAAGATAAATACAATAAGGTG
TCATCTGTTCCAGAAGTACCCTCAGTGCCTAAACCAGAATACAAGGTGCCTTCTTTGCCA
AAGAATGCTTACTACAAGAAGCCATCAATTCCAGAAGATAAATACAATAAGGTGTCATCT
GTTCCAGAAGTACCCTCAGTGCCTAAACCAGAATACAAGGTGCCGTCTCTGCCCAAAAAT
GACTACGTCAAGAAACCATCACCTTCTCCATCACCACCACCTCCATATTATTAA