Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g099410.2.1
CDS Infomation

Pectinesterase (AHRD V3.3 *** K4DHW2_SOLLC)
Sequence

ATGGCGGAGGCCGGTAAAAAGAAAATAGTAATTGCTGGAATTGCTTCAATTCTTCTAGTT
GCTTGTGTTGTTGGTGCTGCCGTTACGTTTACAAAAAAAAATGATGATTCGACATCTAAT
GGGGGTGAAATTTCGAGCTCTACCAAATCAGTACAAGCCATGTGTCAACCTACTCAATAT
AAAGAAACATGTGCAAAATCACTTGGATCAGCTAAAAATACAACCAATCCAAAAGAGTTG
ATTAAAGCCGCATTTGACAATACTTTGACCGAAATTACAAATTCAATTAAAAATTCAGCT
CCATTTAAAGAAGCTGCAAATGATCCAAGGACTAAGAATGCTTTAAAAGTTTGTGATGAA
GTTCTTGACCGTTCGATCGAAGAGATCAAGAGATCATTTTCAAAAATTGATAGTAATGAC
CTTGATAAATTGATTAAAGAGTATATCTATGATGTTAGGTCATGGCTTAGCTCTGCTGTT
ACATTGGAAGAGACTTGTATAGATGCATTCGCTAACACGACTGGTGATACTGGTGAGAAA
ATGAAGAATATCTTGAAGACTGCTAGCGAGTTGTCAAGTGTTGCACTTGATATTGTTAGT
AGTTTTGAGGAACAAATGGTTGGGTTGCAAGGCCTAGGCATCACTAACAGACGATTGTTG
GTCGCGGAAGCAGGAAACCGAAGGCTTCTCCAAATTGCAACCCTCAAGCCCAATGTTGTG
GTGGCTCAAGATGGTAGTGGACAACATAAATCAATCAATGAGGCTCTTAAAACAGTGCCC
CCAAACAATGCTCAACCCTATGTCATCTTCATCAAGGCTGGTATTTACAATGAAAATATC
GAAGTTGCCAATACAATGACCAATGTTGTATTCATTGGTGAAGGCTCAAACAAGACCAAA
ATTACTAGCAACAAAAATTATCTTGATGGTCTCCCAATCTTCCAAACTGCCACTGTTTCC
ATCTCAGGACAAGGATTCGTGGCTAAGGACATTGCATTCGAGAACTCAGCAGGGCCTTTG
AAAAAAGAAGCTGTTGCACTACGTGTCTCAGCTGAAATGACAGCATTCCAGAACTGTCAA
ATTGATGGTTACCAATCAACGCTTATGACTCATATTGGAAGACAATTCTATCGCGATTGT
ACCATCTCAGGAACAATCGATTTCATCTTTGGAGACGCGGTGGCTGTGTTGCAGAACTGT
AAGATAATCGCGAGGAAACCTGAGGAGATGCAGACACAGGCTATCACAATCGCGGCTCAG
GGAAGGATGGAGCCATCCGGAACAGGTATAATTATCATACAAAACTGCACGATCACAGCT
GAGCCAGCTTTGGTTGCCATCAACCCACCACGCAACAAGGCATTCCTCGGACGACCAGCG
AAAATGTACTCAAGGACCATAGTGATGCAATCTCAAATTGATGGATTCATTGAACCTGAA
GGATGGACTCCATTTTTTGGTACCTTTGGACTTGAGACTTTATATTTTGTGGAGTATCAA
AATAGGGGTCCAGGTGCAAATACTGATGAAAGAGTAACTTGGAAGAGTTATATGAAAAAC
CCTCCACAAGATGTTATTGCTAAATTTGCTCCAGGAGTTGTACTTAAAGGTGGTGATAAT
ACTGATGGATGGGTTACAAAAACTGGTGTCCCATATGAACCAGCAATGATGAAAATGTAA

Peptide Sequence

PEP ID

Solyc12g099410.2.1
PEP Infomation

Pectinesterase (AHRD V3.3 *** K4DHW2_SOLLC)
Sequence

MAEAGKKKIVIAGIASILLVACVVGAAVTFTKKNDDSTSNGGEISSSTKSVQAMCQPTQY
KETCAKSLGSAKNTTNPKELIKAAFDNTLTEITNSIKNSAPFKEAANDPRTKNALKVCDE
VLDRSIEEIKRSFSKIDSNDLDKLIKEYIYDVRSWLSSAVTLEETCIDAFANTTGDTGEK
MKNILKTASELSSVALDIVSSFEEQMVGLQGLGITNRRLLVAEAGNRRLLQIATLKPNVV
VAQDGSGQHKSINEALKTVPPNNAQPYVIFIKAGIYNENIEVANTMTNVVFIGEGSNKTK
ITSNKNYLDGLPIFQTATVSISGQGFVAKDIAFENSAGPLKKEAVALRVSAEMTAFQNCQ
IDGYQSTLMTHIGRQFYRDCTISGTIDFIFGDAVAVLQNCKIIARKPEEMQTQAITIAAQ
GRMEPSGTGIIIIQNCTITAEPALVAINPPRNKAFLGRPAKMYSRTIVMQSQIDGFIEPE
GWTPFFGTFGLETLYFVEYQNRGPGANTDERVTWKSYMKNPPQDVIAKFAPGVVLKGGDN
TDGWVTKTGVPYEPAMMKM*

Transcript Sequence

Transcript ID

Solyc12g099410.2.1
Transcript Infomation

Pectinesterase (AHRD V3.3 *** K4DHW2_SOLLC)
Sequence

ATTTATGAATTACGAGTTTAATTTTTGCATAGTGGCAGAGCCCAGGGGAACACAAAAATT
CGTTAAATATCCCCATATGCTCTGCTTTGAATTATTGAAGAAAAAAAAAACTATCCATTC
TTTATATTAAAATATCTCAAAAAAATTAAAATTTAAAATGGCGGAGGCCGGTAAAAAGAA
AATAGTAATTGCTGGAATTGCTTCAATTCTTCTAGTTGCTTGTGTTGTTGGTGCTGCCGT
TACGTTTACAAAAAAAAATGATGATTCGACATCTAATGGGGGTGAAATTTCGAGCTCTAC
CAAATCAGTACAAGCCATGTGTCAACCTACTCAATATAAAGAAACATGTGCAAAATCACT
TGGATCAGCTAAAAATACAACCAATCCAAAAGAGTTGATTAAAGCCGCATTTGACAATAC
TTTGACCGAAATTACAAATTCAATTAAAAATTCAGCTCCATTTAAAGAAGCTGCAAATGA
TCCAAGGACTAAGAATGCTTTAAAAGTTTGTGATGAAGTTCTTGACCGTTCGATCGAAGA
GATCAAGAGATCATTTTCAAAAATTGATAGTAATGACCTTGATAAATTGATTAAAGAGTA
TATCTATGATGTTAGGTCATGGCTTAGCTCTGCTGTTACATTGGAAGAGACTTGTATAGA
TGCATTCGCTAACACGACTGGTGATACTGGTGAGAAAATGAAGAATATCTTGAAGACTGC
TAGCGAGTTGTCAAGTGTTGCACTTGATATTGTTAGTAGTTTTGAGGAACAAATGGTTGG
GTTGCAAGGCCTAGGCATCACTAACAGACGATTGTTGGTCGCGGAAGCAGGAAACCGAAG
GCTTCTCCAAATTGCAACCCTCAAGCCCAATGTTGTGGTGGCTCAAGATGGTAGTGGACA
ACATAAATCAATCAATGAGGCTCTTAAAACAGTGCCCCCAAACAATGCTCAACCCTATGT
CATCTTCATCAAGGCTGGTATTTACAATGAAAATATCGAAGTTGCCAATACAATGACCAA
TGTTGTATTCATTGGTGAAGGCTCAAACAAGACCAAAATTACTAGCAACAAAAATTATCT
TGATGGTCTCCCAATCTTCCAAACTGCCACTGTTTCCATCTCAGGACAAGGATTCGTGGC
TAAGGACATTGCATTCGAGAACTCAGCAGGGCCTTTGAAAAAAGAAGCTGTTGCACTACG
TGTCTCAGCTGAAATGACAGCATTCCAGAACTGTCAAATTGATGGTTACCAATCAACGCT
TATGACTCATATTGGAAGACAATTCTATCGCGATTGTACCATCTCAGGAACAATCGATTT
CATCTTTGGAGACGCGGTGGCTGTGTTGCAGAACTGTAAGATAATCGCGAGGAAACCTGA
GGAGATGCAGACACAGGCTATCACAATCGCGGCTCAGGGAAGGATGGAGCCATCCGGAAC
AGGTATAATTATCATACAAAACTGCACGATCACAGCTGAGCCAGCTTTGGTTGCCATCAA
CCCACCACGCAACAAGGCATTCCTCGGACGACCAGCGAAAATGTACTCAAGGACCATAGT
GATGCAATCTCAAATTGATGGATTCATTGAACCTGAAGGATGGACTCCATTTTTTGGTAC
CTTTGGACTTGAGACTTTATATTTTGTGGAGTATCAAAATAGGGGTCCAGGTGCAAATAC
TGATGAAAGAGTAACTTGGAAGAGTTATATGAAAAACCCTCCACAAGATGTTATTGCTAA
ATTTGCTCCAGGAGTTGTACTTAAAGGTGGTGATAATACTGATGGATGGGTTACAAAAAC
TGGTGTCCCATATGAACCAGCAATGATGAAAATGTAA