Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g098990.2.1
CDS Infomation

Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** B9RZZ6_RICCO)
Sequence

ATGGCGACCAATTCTATTTCTTTATCTTCTTCATCTTCACTCTTTCTCTCTCCTCTAATT
CATCCCGCCGGCGGTAACATTCGTCGTCTTTTCGACTTCCGGCGGCCACTCATCGCCGTA
ATATGTTGCCGTGCTTCTTCTTCAGTTGCATTTCCGAAGAAAAAGCACTGGAAACAAGGG
GAATACCCAGGATTCACTGAACAATCTGGTTTTAAAAACAATAAGAGAACGCCCATTAAG
AATATTAAGAAAAAATTGGATAGAAAGAGTAATGCTAAAGCTTGGGTTAATACTATTACT
GAAGCTCTTTCTGAGTATATTGAGAAAAAACAATGGGTTCAAGCTCTTGAGGTATTTGAA
ATGCTAAAGGAACAACCCTTTTATCAATCGAAAGAGAGTACATATATGAAGCTTCTTGTA
CTTCTTGGGAGATGCGGGCAACCAGGGAAAGCACAACAACTTTTTGATACAATGATTGAA
GAGGGATTGGATCCCACACCAGAATTCTATACAGCCTTGGTTGGTGCTTACTGTAGAAGC
AACATAATTGACAAGGCATTTACGATTCTACAACGGATGATTGAGCTCCCTTATTGTCAG
CCAAATGTTTATACATACAGTATATTAATTAAGGCATGTGTGGATGCATCCCGGTTTGAT
CTGGTTGACTCTCTTTATGAACAAATGGCTGAACGTTCCATAGTTCCTAACACTGTCACC
CAAAATATAGTCTTGAGTGGTTACGGGAGAGCAGGGAAATATGAAGAGATGGAGAAAGTG
CTTTCGGGTATGCTTGAGAGCACAGACAGCAGACCTGATATATGGACAATGAACACAATC
CTGAGCTTATTTGGCAACAAGGGGCAAGTTGAAATGATGGAGAGATGGTATGAGAAGTTT
TGTAGTTTCGGTATTGAGCCAGAGACACGAACATTTAATATCCTTATTAGTGCTTATGGG
AAGAAAAGAATGTACGATAAGATGTCATCGGTGATGGAGTACATGCGTAAACTTTCATTT
CCTTGGACAACATCGACTTACAACAACGTCATCGAAGCGTTTTCAGATATAGGGGATGCT
AAGCATATGGAGTACACATTTGATCAAATGCGTGCTGAAGGCGTTAAAGGTGACACCAAG
ACTTTTTGCTGTCTCATTAGAGGATATGCAAATGCAGGCCTTTTTCCTAAGGTGATCAAC
GCTGTCCAATTAGCTGGGAAGTTGGAGATCCCTGAAAACAATTCCTTTTTCAGTTCTGTT
ATTTATGCTTGTGCAAAGGCAGAGGACTTATTGGAGATGGAGAGAGTTTTCAAGCGAATG
AAAGATAAGGGATTCCGACCAGATGACACAACTTACACTGTTATGGCTGAGGCATATAGA
AAGGAAGGAATGACAGACAAAGTCTATGATTTAGAGCAAGAAAAGCGGATGATGTCTGCC
TCAGATTCCTGCGACAGCCAAGATAAGCTAGAGCTAATGCCTACTTGA

Peptide Sequence

PEP ID

Solyc12g098990.2.1
PEP Infomation

Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** B9RZZ6_RICCO)
Sequence

MATNSISLSSSSSLFLSPLIHPAGGNIRRLFDFRRPLIAVICCRASSSVAFPKKKHWKQG
EYPGFTEQSGFKNNKRTPIKNIKKKLDRKSNAKAWVNTITEALSEYIEKKQWVQALEVFE
MLKEQPFYQSKESTYMKLLVLLGRCGQPGKAQQLFDTMIEEGLDPTPEFYTALVGAYCRS
NIIDKAFTILQRMIELPYCQPNVYTYSILIKACVDASRFDLVDSLYEQMAERSIVPNTVT
QNIVLSGYGRAGKYEEMEKVLSGMLESTDSRPDIWTMNTILSLFGNKGQVEMMERWYEKF
CSFGIEPETRTFNILISAYGKKRMYDKMSSVMEYMRKLSFPWTTSTYNNVIEAFSDIGDA
KHMEYTFDQMRAEGVKGDTKTFCCLIRGYANAGLFPKVINAVQLAGKLEIPENNSFFSSV
IYACAKAEDLLEMERVFKRMKDKGFRPDDTTYTVMAEAYRKEGMTDKVYDLEQEKRMMSA
SDSCDSQDKLELMPT*

Transcript Sequence

Transcript ID

Solyc12g098990.2.1
Transcript Infomation

Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** B9RZZ6_RICCO)
Sequence

TTGAAAAAGAAATTGAATGTTTAATTGAGAAGAAAATGGCGACCAATTCTATTTCTTTAT
CTTCTTCATCTTCACTCTTTCTCTCTCCTCTAATTCATCCCGCCGGCGGTAACATTCGTC
GTCTTTTCGACTTCCGGCGGCCACTCATCGCCGTAATATGTTGCCGTGCTTCTTCTTCAG
TTGCATTTCCGAAGAAAAAGCACTGGAAACAAGGGGAATACCCAGGATTCACTGAACAAT
CTGGTTTTAAAAACAATAAGAGAACGCCCATTAAGAATATTAAGAAAAAATTGGATAGAA
AGAGTAATGCTAAAGCTTGGGTTAATACTATTACTGAAGCTCTTTCTGAGTATATTGAGA
AAAAACAATGGGTTCAAGCTCTTGAGGTATTTGAAATGCTAAAGGAACAACCCTTTTATC
AATCGAAAGAGAGTACATATATGAAGCTTCTTGTACTTCTTGGGAGATGCGGGCAACCAG
GGAAAGCACAACAACTTTTTGATACAATGATTGAAGAGGGATTGGATCCCACACCAGAAT
TCTATACAGCCTTGGTTGGTGCTTACTGTAGAAGCAACATAATTGACAAGGCATTTACGA
TTCTACAACGGATGATTGAGCTCCCTTATTGTCAGCCAAATGTTTATACATACAGTATAT
TAATTAAGGCATGTGTGGATGCATCCCGGTTTGATCTGGTTGACTCTCTTTATGAACAAA
TGGCTGAACGTTCCATAGTTCCTAACACTGTCACCCAAAATATAGTCTTGAGTGGTTACG
GGAGAGCAGGGAAATATGAAGAGATGGAGAAAGTGCTTTCGGGTATGCTTGAGAGCACAG
ACAGCAGACCTGATATATGGACAATGAACACAATCCTGAGCTTATTTGGCAACAAGGGGC
AAGTTGAAATGATGGAGAGATGGTATGAGAAGTTTTGTAGTTTCGGTATTGAGCCAGAGA
CACGAACATTTAATATCCTTATTAGTGCTTATGGGAAGAAAAGAATGTACGATAAGATGT
CATCGGTGATGGAGTACATGCGTAAACTTTCATTTCCTTGGACAACATCGACTTACAACA
ACGTCATCGAAGCGTTTTCAGATATAGGGGATGCTAAGCATATGGAGTACACATTTGATC
AAATGCGTGCTGAAGGCGTTAAAGGTGACACCAAGACTTTTTGCTGTCTCATTAGAGGAT
ATGCAAATGCAGGCCTTTTTCCTAAGGTGATCAACGCTGTCCAATTAGCTGGGAAGTTGG
AGATCCCTGAAAACAATTCCTTTTTCAGTTCTGTTATTTATGCTTGTGCAAAGGCAGAGG
ACTTATTGGAGATGGAGAGAGTTTTCAAGCGAATGAAAGATAAGGGATTCCGACCAGATG
ACACAACTTACACTGTTATGGCTGAGGCATATAGAAAGGAAGGAATGACAGACAAAGTCT
ATGATTTAGAGCAAGAAAAGCGGATGATGTCTGCCTCAGATTCCTGCGACAGCCAAGATA
AGCTAGAGCTAATGCCTACTTGAGAACTAAATATGAAATTTAATTTAACAATGCATTGGA
GCACCAAAGCTACATCTTCAGTGTTTTCAGCAGAGCTGTAGATTGATAAGATCACTCAGT
TGTCTGCTTGGAGCGGGTAACTATCCTTGTCACCAAGTTTACGAGAAGGTGAATCTAAGC
CTTGCACGAATGGATCACTTTTACTGTATCATTGTAAAGCTCAATCTTTTATCGTGTGGT
ATTGCCATGTTTGTTCTCTAACTCTGTATCAGGTGTGACTTCTTTTCCTAAATAGAGAGA
GCTATTATGGCAAGAATGCTACATTCGATGTTCCAAGCAGGTTCTGCTGCCCTTTTACTT
TTTGGTTTTTGCCTTTTACTGTTAAAATACCAATTCAGCTTTGACTATTGTTTATTATAT
GATGGATTCCTAGACTAGTTTTTCTCCATTTTTCTTATATCTGCAAAGCCTCTTGCTCAT
GGAGCTGTATTTTTCATTAGAGAATACAATCCAGAGCTGTATT