Plant GARDEN
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TOP > About the Species(Solanum lycopersicum ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Solanum lycopersicum

CDS Sequence

CDS ID

Solyc12g098920.2.1
CDS Infomation

RelA-SpoT like protein RSH4 (AHRD V3.3 *** Q84LE6_TOBAC)
Sequence

ATGGAGCTCTACTTAAGCGATTACACTCTCAATTTCCCCTCAAATACTAAAAAATCCCCA
CACTTACTCTTCTCCAAAACCCCAAATTACTTCCGCCGGCGCCGGCGCCGGAATCGGAGT
TGTAAGACCCAGATATCCTCCTCCGCGAGGGTTTCAGCAGTGGTGGCGGCGCCGGAACAG
TCCGGCGGGAAAATGGTAGTGGAGTTAGTGGGTGCTTTTAATGAGCTAACTGAAAGAATG
GATACTAGTGTTCTTTCTACTAGCTCTTCTCGATTGCTGTTTAAAACTCTTAAATTGTGT
ATTCCGATTCTTCAGTCACTTCCACTTGCACCCGATGGCCGATCTCCGATATCGAAAGCT
CTATCTGTTGCTGTCATTTTAGCTGATTTGCAGATGGATGCTGAAGTTATATCCACTGGG
CTACTAAGAGAAGTTCTAGAGACAGGTGCTATATCAATATATGATGTGAGGGATCGGATT
GGTACCAGTACTGCTCATTTAATGCATGAAAGCTTGCGTGTGAAGCATATGGCCTTAAAG
GTAGAAGTATTGGATGATGATAGCGCAACTGCATTGAGGAAATTTTGTCTGACCTACTAT
GATGTCAGGGCATTAGTATTAGACCTGGCTATCAAGCTCGATATGATGAGACACCTTGAT
TATTTACCTAGGTACCGGCAGCAGATGATAGCACTTGAGGTTATGAAACTACATGCTCCT
CTAGCGCATGCCATCGGAACTAACCTATTATCTCTTGAACTCGAGGATCTTTCTTTTAGG
TACTTGTTTCCTTACTCATATCTATATCTTGATGCATGGTTGAGAAGTCACGAGTCTGGA
AATAAGCCTCTGATAGATATCTGCAAGGAGCAGCTGCTTCAGTCCCTCAAATCTGATCCA
CCATTAAATGAAATGGTGAGTAAGATATCTGTTGAGGGTCGTTATAAAAGTCGTTATAGC
ACCATGAAGAAACTCTTGAGAGATGGTCGGAAGCTTGAAGAGGTGAATGACATCTTAGGT
CTACGAGTTGTATTGACTCCTATATCAGGAGTAGATGAGTCGGAAATCGGGGAAAAGGCT
TGCTACAGAGCACGTGAAGTTGTCCAATCTTTGTGGGAAGAGATACCAAGTAGGTCAAAG
GACTATATCTTAAGGCCTAAGGCTAATGGATATAGAAGTTTGCACATGGCTGTTGATACC
AGTGAAAATGGACGGACTAGACCGCTAATGGAAATTCAAATACGAACAGAAGAAATGGAT
ATGCTAGCATCTGGAGGGCCAGCATCTCATGCATTGTACAAGGGCGGTGTTACTGATCCT
GAAGAGGCGAGACATCTAAAGGCAATCATGATCGCTGCAGCAGAGCTTGCAGCATTGCGT
CTTAGAGATTTTCCTTCGGCGAATCAAAAAGGTCTGGAAATTGACAAGAGAGGCAGGGTG
TTCCGTCTTCTTGACAAGAATGGAGATGGTAAAATAAGCATCGACGAACTTATGGAAGTG
ATGGAAGAGCTCGGTGCCCCAGGAGATGATGCGCGGGAGATGATGCAACTTCTCGATTCA
AACAGTGATGGTTTTCTGAGCTCAGATGAATTTGATATATTTCAGAATCAGGTTGAATTC
ATCCGGAATATAGAAGACAGAGATGATCATTACCAAACACTGTTAAATGCTAAGCTGCAA
TTGGCAAACGACACCGGTTTGATTCAACTGTACAGTAAAGAGCAAGGTAGTCTGGTAACA
AATTAA

Peptide Sequence

PEP ID

Solyc12g098920.2.1
PEP Infomation

RelA-SpoT like protein RSH4 (AHRD V3.3 *** Q84LE6_TOBAC)
Sequence

MELYLSDYTLNFPSNTKKSPHLLFSKTPNYFRRRRRRNRSCKTQISSSARVSAVVAAPEQ
SGGKMVVELVGAFNELTERMDTSVLSTSSSRLLFKTLKLCIPILQSLPLAPDGRSPISKA
LSVAVILADLQMDAEVISTGLLREVLETGAISIYDVRDRIGTSTAHLMHESLRVKHMALK
VEVLDDDSATALRKFCLTYYDVRALVLDLAIKLDMMRHLDYLPRYRQQMIALEVMKLHAP
LAHAIGTNLLSLELEDLSFRYLFPYSYLYLDAWLRSHESGNKPLIDICKEQLLQSLKSDP
PLNEMVSKISVEGRYKSRYSTMKKLLRDGRKLEEVNDILGLRVVLTPISGVDESEIGEKA
CYRAREVVQSLWEEIPSRSKDYILRPKANGYRSLHMAVDTSENGRTRPLMEIQIRTEEMD
MLASGGPASHALYKGGVTDPEEARHLKAIMIAAAELAALRLRDFPSANQKGLEIDKRGRV
FRLLDKNGDGKISIDELMEVMEELGAPGDDAREMMQLLDSNSDGFLSSDEFDIFQNQVEF
IRNIEDRDDHYQTLLNAKLQLANDTGLIQLYSKEQGSLVTN*

Transcript Sequence

Transcript ID

Solyc12g098920.2.1
Transcript Infomation

RelA-SpoT like protein RSH4 (AHRD V3.3 *** Q84LE6_TOBAC)
Sequence

ACACGTGGCATGCCACTATCCATAGAAAAAAAAAAGTCTACTTTCTTCTTCCACATTTCT
CTCAATTCTTGATTTCTCTGTAAATTCACCAAAAATTCATCCATGGCGATTCTTCTTCCA
TCTTCAAAATCACCATAACCCATTTCTCCATTCATTATGGAGCTCTACTTAAGCGATTAC
ACTCTCAATTTCCCCTCAAATACTAAAAAATCCCCACACTTACTCTTCTCCAAAACCCCA
AATTACTTCCGCCGGCGCCGGCGCCGGAATCGGAGTTGTAAGACCCAGATATCCTCCTCC
GCGAGGGTTTCAGCAGTGGTGGCGGCGCCGGAACAGTCCGGCGGGAAAATGGTAGTGGAG
TTAGTGGGTGCTTTTAATGAGCTAACTGAAAGAATGGATACTAGTGTTCTTTCTACTAGC
TCTTCTCGATTGCTGTTTAAAACTCTTAAATTGTGTATTCCGATTCTTCAGTCACTTCCA
CTTGCACCCGATGGCCGATCTCCGATATCGAAAGCTCTATCTGTTGCTGTCATTTTAGCT
GATTTGCAGATGGATGCTGAAGTTATATCCACTGGGCTACTAAGAGAAGTTCTAGAGACA
GGTGCTATATCAATATATGATGTGAGGGATCGGATTGGTACCAGTACTGCTCATTTAATG
CATGAAAGCTTGCGTGTGAAGCATATGGCCTTAAAGGTAGAAGTATTGGATGATGATAGC
GCAACTGCATTGAGGAAATTTTGTCTGACCTACTATGATGTCAGGGCATTAGTATTAGAC
CTGGCTATCAAGCTCGATATGATGAGACACCTTGATTATTTACCTAGGTACCGGCAGCAG
ATGATAGCACTTGAGGTTATGAAACTACATGCTCCTCTAGCGCATGCCATCGGAACTAAC
CTATTATCTCTTGAACTCGAGGATCTTTCTTTTAGGTACTTGTTTCCTTACTCATATCTA
TATCTTGATGCATGGTTGAGAAGTCACGAGTCTGGAAATAAGCCTCTGATAGATATCTGC
AAGGAGCAGCTGCTTCAGTCCCTCAAATCTGATCCACCATTAAATGAAATGGTGAGTAAG
ATATCTGTTGAGGGTCGTTATAAAAGTCGTTATAGCACCATGAAGAAACTCTTGAGAGAT
GGTCGGAAGCTTGAAGAGGTGAATGACATCTTAGGTCTACGAGTTGTATTGACTCCTATA
TCAGGAGTAGATGAGTCGGAAATCGGGGAAAAGGCTTGCTACAGAGCACGTGAAGTTGTC
CAATCTTTGTGGGAAGAGATACCAAGTAGGTCAAAGGACTATATCTTAAGGCCTAAGGCT
AATGGATATAGAAGTTTGCACATGGCTGTTGATACCAGTGAAAATGGACGGACTAGACCG
CTAATGGAAATTCAAATACGAACAGAAGAAATGGATATGCTAGCATCTGGAGGGCCAGCA
TCTCATGCATTGTACAAGGGCGGTGTTACTGATCCTGAAGAGGCGAGACATCTAAAGGCA
ATCATGATCGCTGCAGCAGAGCTTGCAGCATTGCGTCTTAGAGATTTTCCTTCGGCGAAT
CAAAAAGGTCTGGAAATTGACAAGAGAGGCAGGGTGTTCCGTCTTCTTGACAAGAATGGA
GATGGTAAAATAAGCATCGACGAACTTATGGAAGTGATGGAAGAGCTCGGTGCCCCAGGA
GATGATGCGCGGGAGATGATGCAACTTCTCGATTCAAACAGTGATGGTTTTCTGAGCTCA
GATGAATTTGATATATTTCAGAATCAGGTTGAATTCATCCGGAATATAGAAGACAGAGAT
GATCATTACCAAACACTGTTAAATGCTAAGCTGCAATTGGCAAACGACACCGGTTTGATT
CAACTGTACAGTAAAGAGCAAGGTAGTCTGGTAACAAATTAAATTAGTAAATTCTGTTAA
ATCTGTGTTCTTTATGTATGTATTTATTGAAAAGGCCGTGGCGCTATACTGGGGATTATT
GAAGCCTCAAAATAGATATCTTTCCAGGGAAAGATACTTGATCCCTCTGTATAATAGTTA
TCTGTGCACGGTCTCAATCAAATATAATGTATCTGTATGTTGTAACATGTATCATTTCTG
TACAACTCTTGTACATAGTGTTTTTATGAATAGAATGTACACATTTGAGTGAATAAATAT
ACTTGTAGTGTATCATTTGAATTGGAAAATTTGTCCCTGGTTGTATGGTCTCATTCTTCG
GAATAGTATTT